BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0225000 Os02g0225000|J013111F15
(169 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0225000 Mitochondrial substrate carrier family protein 231 1e-61
Os09g0508900 Mitochondrial substrate carrier family protein 201 3e-52
Os03g0265300 Mitochondrial substrate carrier family protein 109 1e-24
>Os02g0225000 Mitochondrial substrate carrier family protein
Length = 169
Score = 231 bits (590), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/169 (72%), Positives = 122/169 (72%)
Query: 1 IIFCRYXXXXXXXXXXXXXXXXAAADLHLARRGEQIRAGWRMSSXXXXXXXXXXXXXXXX 60
IIFCRY AAADLHLARRGEQIRAGWRMSS
Sbjct: 1 IIFCRYLPSRCLLRSSRTSRGLAAADLHLARRGEQIRAGWRMSSAAVNGLAGAGGGIIAQ 60
Query: 61 XXTYPLQTVNTRQQTERSXXXXXXXXXXXXXTSTLFQMLQLFQTEGWGGLYSGLKPSLIG 120
TYPLQTVNTRQQTERS TSTLFQMLQLFQTEGWGGLYSGLKPSLIG
Sbjct: 61 IITYPLQTVNTRQQTERSAKKKKANGAAIANTSTLFQMLQLFQTEGWGGLYSGLKPSLIG 120
Query: 121 TAASQGIYYYFYQILKNKVEDLAVARGKKGLGDGTVGMFSWLGIAAVAG 169
TAASQGIYYYFYQILKNKVEDLAVARGKKGLGDGTVGMFSWLGIAAVAG
Sbjct: 121 TAASQGIYYYFYQILKNKVEDLAVARGKKGLGDGTVGMFSWLGIAAVAG 169
>Os09g0508900 Mitochondrial substrate carrier family protein
Length = 413
Score = 201 bits (510), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/137 (75%), Positives = 103/137 (75%)
Query: 33 GEQIRAGWRMSSXXXXXXXXXXXXXXXXXXTYPLQTVNTRQQTERSXXXXXXXXXXXXXT 92
Q RAGWRMSS TYPLQTVNTRQQTERS T
Sbjct: 42 APQPRAGWRMSSAAVNGLAGAGGGIIAQIITYPLQTVNTRQQTERSAKKKKANGAAIANT 101
Query: 93 STLFQMLQLFQTEGWGGLYSGLKPSLIGTAASQGIYYYFYQILKNKVEDLAVARGKKGLG 152
STLFQMLQLFQTEGWGGLYSGLKPSLIGTAASQGIYYYFYQILKNKVEDLAVARGKKGLG
Sbjct: 102 STLFQMLQLFQTEGWGGLYSGLKPSLIGTAASQGIYYYFYQILKNKVEDLAVARGKKGLG 161
Query: 153 DGTVGMFSWLGIAAVAG 169
DGTVGMFSWLGIAAVAG
Sbjct: 162 DGTVGMFSWLGIAAVAG 178
>Os03g0265300 Mitochondrial substrate carrier family protein
Length = 344
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 70/107 (65%), Gaps = 6/107 (5%)
Query: 63 TYPLQTVNTRQQTERSXXXXXXXXXXXXXTSTLFQMLQLFQTEGWGGLYSGLKPSLIGTA 122
TYPLQTVN RQQTER + QM + + EGW LY GL PSL+GTA
Sbjct: 22 TYPLQTVNARQQTERDPSKPAFK------DGAVRQMCLVVKHEGWERLYGGLMPSLVGTA 75
Query: 123 ASQGIYYYFYQILKNKVEDLAVARGKKGLGDGTVGMFSWLGIAAVAG 169
ASQG+YYYFYQI +++ E A+ R ++G+GDG+VGM L +AA++G
Sbjct: 76 ASQGVYYYFYQIFRSRAEAAALQRSRRGIGDGSVGMLQSLTVAALSG 122
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,676,553
Number of extensions: 104116
Number of successful extensions: 287
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 3
Length of query: 169
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 75
Effective length of database: 12,127,685
Effective search space: 909576375
Effective search space used: 909576375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)