Os09g0508900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochondrial substrate carrier family protein.
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Os09g0508900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochondrial substrate carrier family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.82 | 0.304 | 11.7 | -0.809 | 0.255 | 0.555 | -0.0825 | -0.246 | -0.454 | 15.9 | 25.79 | 1490 | -- | -- |
| 41.89 | 0.301 | 11.7 | -0.741 | 0.246 | 0.531 | -0.078 | -- | -0.432 | 15.8 | 25.8 | 1505 | -- | -- |
| 41.84 | 0.301 | 11.7 | -0.805 | 0.252 | 0.555 | -- | -0.236 | -0.452 | 15.8 | 25.79 | 1505 | -- | -- |
| 41.9 | 0.301 | 11.7 | -0.74 | 0.253 | 0.532 | -- | -- | -0.436 | 15.9 | 25.73 | 1492 | -- | -- |
| 44.88 | 0.312 | 11.7 | -0.788 | -- | 0.545 | -- | -0.184 | -0.439 | -- | 25.82 | 1658 | -- | -- |
| 50.62 | 0.334 | 11.7 | -0.552 | 0.24 | -- | -0.118 | -- | -0.252 | 16.1 | -- | -- | -- | -- |
| 50.66 | 0.333 | 11.7 | -0.553 | 0.239 | -- | -- | -- | -0.253 | 16.1 | -- | -- | -- | -- |
| 44.93 | 0.312 | 11.7 | -0.761 | -- | 0.553 | -- | -- | -0.441 | -- | 25.88 | 1658 | -- | -- |
| 54.85 | 0.345 | 11.7 | -- | 0.261 | 0.353 | -- | -- | -0.298 | 15.9 | 25.6 | 1491 | -- | -- |
| 53.77 | 0.343 | 11.7 | -0.563 | -- | -- | -- | -- | -0.259 | -- | -- | -- | -- | -- |
| 58.72 | 0.358 | 11.7 | -- | 0.25 | -- | -- | -- | -0.191 | 16.1 | -- | -- | -- | -- |
| 53.65 | 0.342 | 11.7 | -- | -- | 0.307 | -- | -- | -0.239 | -- | 27.2 | 1699 | -- | -- |
| 62.13 | 0.368 | 11.7 | -- | -- | -- | -- | -- | -0.197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.58 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 2 | 41.77 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 3 | 41.87 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 6 | 41.89 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 8 | 3 |
| 7 | 41.91 | temperature | 20.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 9 | 41.92 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 11 | 41.94 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 19 | 41.98 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 20 | 41.99 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 26 | 42.04 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 27 | 42.04 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 44 | 42.13 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 48 | 42.15 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 53 | 42.16 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 61 | 42.18 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 65 | 42.19 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 68 | 42.21 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 69 | 42.21 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 78 | 42.23 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 89 | 42.25 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 94 | 42.26 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 104 | 42.26 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 109 | 42.27 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 114 | 42.27 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 10 | 18 |
| 118 | 42.28 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 168 | 42.32 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 169 | 42.32 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 212 | 42.34 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 260 | 42.36 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 21 | NA |
| 315 | 42.39 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 1 | NA |
| 326 | 42.40 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 338 | 42.41 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 339 | 42.41 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 341 | 42.41 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 503 | 42.49 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 523 | 42.50 | temperature | 30.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 541 | 42.51 | temperature | 30.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 564 | 42.51 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 604 | 42.52 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 669 | 42.57 | temperature | 25.0 | 720 | > th | dose dependent | sin | 9 | NA |
| 678 | 42.57 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 698 | 42.58 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 13 |
| 701 | 42.58 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 19 |
| 724 | 42.59 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 15 |
| 755 | 42.60 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 821 | 42.64 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 826 | 42.64 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 836 | 42.65 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 16 | NA |
| 845 | 42.65 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 15 |
| 850 | 42.65 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 19 |
| 858 | 42.65 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 906 | 42.67 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 907 | 42.67 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 945 | 42.67 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |