BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0209100 Os02g0209100|AK099955
(621 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0209100 Similar to Coatomer beta\' subunit (Beta\'-coa... 1230 0.0
Os06g0143900 Similar to Coatomer protein complex, beta prime 974 0.0
AK110120 464 e-131
AK105040 322 6e-88
Os03g0711400 Similar to Coatomer alpha subunit 67 3e-11
>Os02g0209100 Similar to Coatomer beta\' subunit (Beta\'-coat protein)
(Beta\'-COP) (p102)
Length = 621
Score = 1230 bits (3182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/621 (96%), Positives = 598/621 (96%)
Query: 1 YDEGTIMIKIGREVPVASMDSSGKIIWSKHNEIQTVNIKTIGADNEIADGERLPLAVKEL 60
YDEGTIMIKIGREVPVASMDSSGKIIWSKHNEIQTVNIKTIGADNEIADGERLPLAVKEL
Sbjct: 1 YDEGTIMIKIGREVPVASMDSSGKIIWSKHNEIQTVNIKTIGADNEIADGERLPLAVKEL 60
Query: 61 GTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSVDGEYAVREST 120
GTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSVDGEYAVREST
Sbjct: 61 GTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSVDGEYAVREST 120
Query: 121 SRIKIYSKNFQERKSIRPPFSAERIFGGVLLAMCTNDFICFHDWAEGRMIRRIDVNVKNL 180
SRIKIYSKNFQERKSIRPPFSAERIFGGVLLAMCTNDFICFHDWAEGRMIRRIDVNVKNL
Sbjct: 121 SRIKIYSKNFQERKSIRPPFSAERIFGGVLLAMCTNDFICFHDWAEGRMIRRIDVNVKNL 180
Query: 181 YWADSGDLVTIASDTSFYILKYNRDVVSSHLDXXXXXXXXXXXDAFELLHEINERIRTGL 240
YWADSGDLVTIASDTSFYILKYNRDVVSSHLD DAFELLHEINERIRTGL
Sbjct: 181 YWADSGDLVTIASDTSFYILKYNRDVVSSHLDGGGSVGEEGVEDAFELLHEINERIRTGL 240
Query: 241 WVGDCFIYNNSSSRLNYCVGGEVTTLFHLDRQMYLLGYLANQSRVYLIDKQFNVVGYTLL 300
WVGDCFIYNNSSSRLNYCVGGEVTTLFHLDRQMYLLGYLANQSRVYLIDKQFNVVGYTLL
Sbjct: 241 WVGDCFIYNNSSSRLNYCVGGEVTTLFHLDRQMYLLGYLANQSRVYLIDKQFNVVGYTLL 300
Query: 301 LTMIEYKTLVMRGDFDRANALLPSIPKEQHDSVARFLESQGMLEEALEIATDSNYRFDLA 360
LTMIEYKTLVMRGDFDRANALLPSIPKEQHDSVARFLESQGMLEEALEIATDSNYRFDLA
Sbjct: 301 LTMIEYKTLVMRGDFDRANALLPSIPKEQHDSVARFLESQGMLEEALEIATDSNYRFDLA 360
Query: 361 VQLGRLEVAKAIAIEAQSESKWRQLGELAMSTGKLDMAEECLLHAMDXXXXXXXXXXXXD 420
VQLGRLEVAKAIAIEAQSESKWRQLGELAMSTGKLDMAEECLLHAMD D
Sbjct: 361 VQLGRLEVAKAIAIEAQSESKWRQLGELAMSTGKLDMAEECLLHAMDLSGLLLLYSSLGD 420
Query: 421 AEGLTKLTSMAKEQGKNNVAFLCFFMLGKLEECLQLLIESNRIPEAALMSRSYLPSKVPE 480
AEGLTKLTSMAKEQGKNNVAFLCFFMLGKLEECLQLLIESNRIPEAALMSRSYLPSKVPE
Sbjct: 421 AEGLTKLTSMAKEQGKNNVAFLCFFMLGKLEECLQLLIESNRIPEAALMSRSYLPSKVPE 480
Query: 481 IVTLWKKDLQKVNPKAAESLADPDEYPNLFEDWQIALNVEANVAPKRGIYPPAEEYIIHA 540
IVTLWKKDLQKVNPKAAESLADPDEYPNLFEDWQIALNVEANVAPKRGIYPPAEEYIIHA
Sbjct: 481 IVTLWKKDLQKVNPKAAESLADPDEYPNLFEDWQIALNVEANVAPKRGIYPPAEEYIIHA 540
Query: 541 ERPNETLVEAFKSMHIHLEEVLPDENGDDTHEAIEENGVEESQEDAVEVDVEADGSTDGA 600
ERPNETLVEAFKSMHIHLEEVLPDENGDDTHEAIEENGVEESQEDAVEVDVEADGSTDGA
Sbjct: 541 ERPNETLVEAFKSMHIHLEEVLPDENGDDTHEAIEENGVEESQEDAVEVDVEADGSTDGA 600
Query: 601 VLVNGNDTEEQWGTNNEESSA 621
VLVNGNDTEEQWGTNNEESSA
Sbjct: 601 VLVNGNDTEEQWGTNNEESSA 621
>Os06g0143900 Similar to Coatomer protein complex, beta prime
Length = 907
Score = 974 bits (2517), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/616 (76%), Positives = 534/616 (86%), Gaps = 8/616 (1%)
Query: 1 YDEGTIMIKIGREVPVASMDSSGKIIWSKHNEIQTVNIKTIGADNEIADGERLPLAVKEL 60
YDEGTIMIK+GREVPVASMD+SGKIIW+KHNEIQTVNIKT+GA E+ DGERLPLAVKEL
Sbjct: 290 YDEGTIMIKMGREVPVASMDTSGKIIWAKHNEIQTVNIKTVGAGFEVTDGERLPLAVKEL 349
Query: 61 GTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSVDGEYAVREST 120
G+CDLYPQSL+HNPNGRFVVVCGDGE+IIYTALAWRNRSFGSALEFVWS +GEYA+REST
Sbjct: 350 GSCDLYPQSLKHNPNGRFVVVCGDGEFIIYTALAWRNRSFGSALEFVWSSEGEYAIREST 409
Query: 121 SRIKIYSKNFQERKSIRPPFSAERIFGGVLLAMCTNDFICFHDWAEGRMIRRIDVNVKNL 180
SRIKI+SK+FQE+K+IRP FSAERIFGG+LLAMC++DFICF+DWA+ R+IRRIDVNVKNL
Sbjct: 410 SRIKIFSKSFQEKKTIRPTFSAERIFGGILLAMCSSDFICFYDWADCRLIRRIDVNVKNL 469
Query: 181 YWADSGDLVTIASDTSFYILKYNRDVVSSHLDXXXXXXXXXXXDAFELLHEINERIRTGL 240
YWADSGDLV IASDTSFYILKYNRDVV+S+L+ DAFELLHE+NER+RTG+
Sbjct: 470 YWADSGDLVAIASDTSFYILKYNRDVVASYLESGKPVDEEGVEDAFELLHEVNERVRTGI 529
Query: 241 WVGDCFIYNNSSSRLNYCVGGEVTTLFHLDRQMYLLGYLANQSRVYLIDKQFNVVGYTLL 300
WVGDCFIYNNSS RLNYCVGGEVTT++HLDR MYLLGYLANQSRVYLIDK+FNV+GYTLL
Sbjct: 530 WVGDCFIYNNSSWRLNYCVGGEVTTMYHLDRPMYLLGYLANQSRVYLIDKEFNVMGYTLL 589
Query: 301 LTMIEYKTLVMRGDFDRANALLPSIPKEQHDSVARFLESQGMLEEALEIATDSNYRFDLA 360
L++IEYKTLVMRGD +RAN +LPSIPK Q+++VA FLES+GMLEEALEIATD++YRFDLA
Sbjct: 590 LSLIEYKTLVMRGDIERANDILPSIPKAQYNNVAHFLESRGMLEEALEIATDADYRFDLA 649
Query: 361 VQLGRLEVAKAIAIEAQSESKWRQLGELAMSTGKLDMAEECLLHAMDXXXXXXXXXXXXD 420
VQLG+LEVAKAIA+EAQSESKW+QLGELAMSTGKLDMAEECL+ A D D
Sbjct: 650 VQLGKLEVAKAIAMEAQSESKWKQLGELAMSTGKLDMAEECLVQAKDLSGLLLLYSSLGD 709
Query: 421 AEGLTKLTSMAKEQGKNNVAFLCFFMLGKLEECLQLLIESNRIPEAALMSRSYLPSKVPE 480
AEG+ KL S AKE GKNNVAFLC FMLGKLE+C+QLLI+SNRIPEAALM+RSYLPSKV E
Sbjct: 710 AEGIEKLASQAKEHGKNNVAFLCLFMLGKLEDCIQLLIDSNRIPEAALMARSYLPSKVSE 769
Query: 481 IVTLWKKDLQKVNPKAAESLADPDEYPNLFEDWQIALNVEANVAPKRGIYPPAEEYIIHA 540
IV +W+ DL KVNPKAAESLADP EYPNLFEDWQ+AL VE NVA +R YPPA+EY+ HA
Sbjct: 770 IVAIWRNDLSKVNPKAAESLADPSEYPNLFEDWQVALTVEKNVASRRVHYPPADEYLNHA 829
Query: 541 ERPNETLVEAFKSMHI----HLEEVLPDENGDDTHEAIEENGVEESQEDAVEVDVEADGS 596
E+ + TLVEAFK M + E+ L DENG+ E +EEN VEES ++AVEVD +
Sbjct: 830 EKSDMTLVEAFKRMQVIEDEETEDAL-DENGEPDEEVLEENKVEESTDEAVEVDADEPEE 888
Query: 597 TDGAVLVNGNDTEEQW 612
T VLVNG + EEQW
Sbjct: 889 T---VLVNGKEGEEQW 901
>AK110120
Length = 830
Score = 464 bits (1195), Expect = e-131, Method: Compositional matrix adjust.
Identities = 218/533 (40%), Positives = 342/533 (64%), Gaps = 12/533 (2%)
Query: 1 YDEGTIMIKIGREVPVASMDSSGKIIWSKHNEIQTVNIKTIGADNEIADGERLPLAVKEL 60
YDEG ++IK+G+E P SMD++GK++W++++E+ + N+ T AD+ + DG+RLP++V+E+
Sbjct: 290 YDEGAVVIKLGKEEPSVSMDAAGKVVWARNSEVLSANVGTT-ADDAVPDGQRLPVSVREM 348
Query: 61 GTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSVDGE-YAVRES 119
G+ ++YPQ L+H+PNGRFV VCGDGEYIIYTALAWRN++FGS L F W+ D YAV +
Sbjct: 349 GSTEVYPQLLQHSPNGRFVTVCGDGEYIIYTALAWRNKAFGSGLGFAWASDSNTYAVHDG 408
Query: 120 TSRIKIYSKNFQERKSIRP-PFSAERIFGGVLLAMCTNDFICFHDWAEGRMIRRIDVNVK 178
+++K++ +NF+ER + ++ E + GG LLA+ F+CF+DW G ++RR+DV K
Sbjct: 409 GAKLKVF-RNFKERPGLLTLAYNVEAVAGGALLAVLGGGFVCFYDWETGALVRRVDVEAK 467
Query: 179 NLYWADSGDLVTIASDTSFYILKYNRDVVSSHLDXXXXXXXXXXXDAFELLHEINERIRT 238
++W+ +G+LV I SFY+L+++RD ++ LD AFE++ E++E +RT
Sbjct: 468 AIHWSTTGELVAIVCQDSFYVLRFDRDAYAAFLDTGAEVDDEGVETAFEVVTEVSESVRT 527
Query: 239 GLWVGDCFIYNNSSSRLNYCVGGEVTTLFHLDRQMYLLGYLANQSRVYLIDKQFNVVGYT 298
W G+C +Y NS++RL Y VG + T+ H D +++LLGY+ RVY+++K + Y
Sbjct: 528 AKWTGECLLYTNSTNRLQYLVGEQTHTITHSDHEIFLLGYIPQHGRVYVVNKDLAIFSYA 587
Query: 299 LLLTMIEYKTLVMRGDFDRANALLPSIPKEQHDSVARFLESQGMLEEALEIATDSNYRFD 358
L L +IEY+T ++RGD D A LL +P +Q + VARFLE+Q + E AL+++TD+ +RFD
Sbjct: 588 LSLALIEYQTAILRGDLDAAAELLEQVPADQRNRVARFLETQELKELALQVSTDAEHRFD 647
Query: 359 LAVQLGRLEVAKAIA---IEAQSESKWRQLGELAMSTGKLDMAEECLLHAMDXXXXXXXX 415
LA+ L E A IA + SES+WR +G+ A++ + +A+EC A D
Sbjct: 648 LAISLDDFETALEIARSGPQVGSESRWRTIGDKALARWNVALAKECFEKAQDVSSMLLVA 707
Query: 416 XXXXDAEGLTKLTSMAKEQGKNNVAFLCFFMLGKLEECLQLLIESNRIPEAALMSRSYLP 475
D L +L +A +G NVAF LG ++ C+ +L ++ R EAAL +R+Y P
Sbjct: 708 TSTNDRAMLARLAELATAKGSTNVAFAALLSLGDVDACIDVLHKAGRTSEAALFARTYAP 767
Query: 476 SKVPEIVTLWKKDLQKVNP----KAAESLADPDEYPNLFED-WQIALNVEANV 523
S+ E+V W+ +L+ N + A S+ADP FE+ W+ +L EA +
Sbjct: 768 SRAAEVVQTWRDELKSANRHKQNEIAASIADPTRDEAAFEEGWKQSLEREAKL 820
>AK105040
Length = 174
Score = 322 bits (824), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 465 EAALMSRSYLPSKVPEIVTLWKKDLQKVNPKAAESLADPDEYPNLFEDWQIALNVEANVA 524
EAALMSRSYLPSKVPEIVTLWKKDLQKVNPKAAESLADPDEYPNLFEDWQIALNVEANVA
Sbjct: 18 EAALMSRSYLPSKVPEIVTLWKKDLQKVNPKAAESLADPDEYPNLFEDWQIALNVEANVA 77
Query: 525 PKRGIYPPAEEYIIHAERPNETLVEAFKSMHIHLEEVLPDENGDDTHEAIEENGVEESQE 584
PKRGIYPPAEEYIIHAERPNETLVEAFKSMHIHLEEVLPDENGDDTHEAIEENGVEESQE
Sbjct: 78 PKRGIYPPAEEYIIHAERPNETLVEAFKSMHIHLEEVLPDENGDDTHEAIEENGVEESQE 137
Query: 585 DAVEVDVEADGSTDGAVLVNGNDTEEQWGTNNEESSA 621
DAVEVDVEADGSTDGAVLVNGNDTEEQWGTNNEESSA
Sbjct: 138 DAVEVDVEADGSTDGAVLVNGNDTEEQWGTNNEESSA 174
>Os03g0711400 Similar to Coatomer alpha subunit
Length = 1218
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 91/417 (21%), Positives = 181/417 (43%), Gaps = 50/417 (11%)
Query: 1 YDEGTIMIKIGREVPVASMDSSGKIIWSKHNEIQTVNIKTIGADNEIADGERLPLAVKEL 60
+D G I+ K+ RE P S+ SG ++ + T + ++A R P +V
Sbjct: 309 HDSGMIVFKLERERPAFSV--SGDTVFYVKDRFLRFFEFTTQKEVQLAPIRR-PGSV--- 362
Query: 61 GTCDLYPQSLRHNPNGRFVVVCGD---GEYIIYT--------ALAWRNRSFGSALEFVWS 109
+ + P++L ++P V++C D G Y +Y A ++ G+ V+
Sbjct: 363 -SLNQSPKTLSYSPTENAVLICSDVDGGSYELYIVPKDSAGRADYLQDAKKGAGGSAVFV 421
Query: 110 VDGEYAVRESTSRIKIYSKNFQE---RKSIRPPFSAERIFGGVLLAMC-TNDFICFHDWA 165
+AV E +S ++ KN + +KS P + + G +C D + D
Sbjct: 422 ARNRFAVLEKSSN-QVLVKNLKNEIVKKSPLPIATDAIYYAGTGNLLCKAEDRVTIFDLQ 480
Query: 166 EGRMIRRIDV-NVKNLYWADSGDLVTIASDTSFYILKYNRDVVSSHLDXXXXXXXXXXXD 224
+ ++ + +VK + W S D+ ++A + ++ N+ +V
Sbjct: 481 QRLILGELQAPSVKYVVW--SSDMESVALLSKHAVVIANKKLVHRCT------------- 525
Query: 225 AFELLHEINERIRTGLW-VGDCFIYNNSSSRLNYCV-GGEVTTLFHLDRQMYLLGYLANQ 282
LHE R+++G W FIY + + + YC+ G+ + LD +Y+ + N
Sbjct: 526 ----LHE-TIRVKSGAWDENGVFIYT-TLNHIKYCLPNGDSGIIKTLDVPIYITRVIGNN 579
Query: 283 SRVYLIDKQFNVVGYTLLLTMIEYKTLVMRGDFDRANALLPSIPKEQHDSVARFLESQGM 342
++ +D+ T+ + +K ++R +D +++ + + +V +L+ +G
Sbjct: 580 --IFCLDRDGKNKLVTVDASEYIFKLALLRKRYDHVMSMIKN-SQLCGQAVISYLQQKGF 636
Query: 343 LEEALEIATDSNYRFDLAVQLGRLEVAKAIAIEAQSESKWRQLGELAMSTGKLDMAE 399
E AL D RF+LA++ G +++A A A E + W +LG A+ G + + E
Sbjct: 637 PEVALHFVKDEKTRFNLALESGNIQIAVASAKEIDDKDHWYRLGIEALRQGNVGIVE 693
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,950,877
Number of extensions: 814534
Number of successful extensions: 2231
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2228
Number of HSP's successfully gapped: 6
Length of query: 621
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 514
Effective length of database: 11,448,903
Effective search space: 5884736142
Effective search space used: 5884736142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)