BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0202500 Os02g0202500|AK062327
(69 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0202500 Conserved hypothetical protein 100 2e-22
Os06g0602600 Alba, DNA/RNA-binding protein family protein 97 2e-21
Os01g0173100 Alba, DNA/RNA-binding protein family protein 80 3e-16
Os12g0489300 Alba, DNA/RNA-binding protein family protein 65 9e-12
>Os02g0202500 Conserved hypothetical protein
Length = 69
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 1 EILKNNGLAVEKKIMTSTVDVKDDSRSRPMQKAKIEIVLGKTDKFDELM 49
EILKNNGLAVEKKIMTSTVDVKDDSRSRPMQKAKIEIVLGKTDKFDELM
Sbjct: 1 EILKNNGLAVEKKIMTSTVDVKDDSRSRPMQKAKIEIVLGKTDKFDELM 49
>Os06g0602600 Alba, DNA/RNA-binding protein family protein
Length = 132
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/49 (95%), Positives = 49/49 (100%)
Query: 1 EILKNNGLAVEKKIMTSTVDVKDDSRSRPMQKAKIEIVLGKTDKFDELM 49
EILKNNGLAVEKKIMTSTVDVKDDSRSRPMQKAKIEI+LGKT+KFDELM
Sbjct: 65 EILKNNGLAVEKKIMTSTVDVKDDSRSRPMQKAKIEILLGKTEKFDELM 113
>Os01g0173100 Alba, DNA/RNA-binding protein family protein
Length = 152
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 44/49 (89%)
Query: 1 EILKNNGLAVEKKIMTSTVDVKDDSRSRPMQKAKIEIVLGKTDKFDELM 49
EILKNNG AVEKKI TSTV++ D+SR RP+QKAKIEIVL K++KFDELM
Sbjct: 88 EILKNNGFAVEKKIRTSTVEINDESRVRPLQKAKIEIVLEKSEKFDELM 136
>Os12g0489300 Alba, DNA/RNA-binding protein family protein
Length = 169
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 41/49 (83%)
Query: 1 EILKNNGLAVEKKIMTSTVDVKDDSRSRPMQKAKIEIVLGKTDKFDELM 49
EILKNNGLA EKKI+TST+ KD+S+ R ++KAKIEI+L K++ F+ +M
Sbjct: 104 EILKNNGLATEKKILTSTIGTKDESKGRLVRKAKIEILLCKSENFNSIM 152
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.128 0.324
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,356,875
Number of extensions: 30952
Number of successful extensions: 36
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 4
Length of query: 69
Length of database: 17,035,801
Length adjustment: 41
Effective length of query: 28
Effective length of database: 14,895,027
Effective search space: 417060756
Effective search space used: 417060756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)