Os06g0602600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Alba, DNA/RNA-binding protein family protein.
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Os06g0602600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Alba, DNA/RNA-binding protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.44 | 0.32 | 11.4 | -0.425 | 0.824 | 1.32 | 0.693 | -1.81 | -0.171 | 17.5 | 18.5 | 93 | -- | -- |
| 49.17 | 0.327 | 11.4 | -0.132 | 0.822 | 1.32 | 0.283 | -- | -0.0889 | 17.5 | 17.43 | 92 | -- | -- |
| 47.45 | 0.321 | 11.4 | -0.362 | 0.822 | 1.33 | -- | -1.39 | -0.151 | 17.5 | 18.26 | 92 | -- | -- |
| 49.33 | 0.327 | 11.4 | -0.129 | 0.824 | 1.3 | -- | -- | -0.0835 | 17.5 | 17.81 | 92 | -- | -- |
| 70.32 | 0.391 | 11.4 | -0.631 | -- | 1.95 | -- | -1.85 | -0.295 | -- | 18.95 | 216 | -- | -- |
| 71.64 | 0.397 | 11.3 | 0.167 | 1.21 | -- | 0.434 | -- | 0.129 | 16.7 | -- | -- | -- | -- |
| 72.12 | 0.398 | 11.3 | 0.17 | 1.22 | -- | -- | -- | 0.131 | 16.7 | -- | -- | -- | -- |
| 72.95 | 0.398 | 11.4 | -0.307 | -- | 1.93 | -- | -- | -0.201 | -- | 18 | 216 | -- | -- |
| 49.71 | 0.328 | 11.4 | -- | 0.84 | 1.24 | -- | -- | -0.065 | 17.5 | 18 | 92 | -- | -- |
| 150.56 | 0.573 | 11.3 | 0.124 | -- | -- | -- | -- | 0.0992 | -- | -- | -- | -- | -- |
| 72.88 | 0.399 | 11.3 | -- | 1.21 | -- | -- | -- | 0.112 | 16.7 | -- | -- | -- | -- |
| 75.21 | 0.404 | 11.4 | -- | -- | 1.81 | -- | -- | -0.156 | -- | 18.54 | 215 | -- | -- |
| 150.96 | 0.573 | 11.3 | -- | -- | -- | -- | -- | 0.0855 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 2 | 45.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 5 | 45.98 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 22 |
| 9 | 46.29 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 13 | 46.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 14 | 46.36 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 18 | 46.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 19 | 46.50 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 25 | 46.62 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 32 | 46.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 36 | 46.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 40 | 46.75 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 47 | 46.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 53 | 46.79 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 66 | 46.88 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 97 | 47.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 101 | 47.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 102 | 47.08 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 103 | 47.08 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 105 | 47.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 108 | 47.10 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 110 | 47.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 10 |
| 113 | 47.12 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 149 | 47.20 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 165 | 47.23 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 171 | 47.24 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 282 | 47.43 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 286 | 47.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 10 |
| 315 | 47.49 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 377 | 47.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 396 | 47.59 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 411 | 47.61 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 424 | 47.63 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 479 | 47.69 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 643 | 47.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 706 | 47.94 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 761 | 48.00 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 776 | 48.01 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 815 | 48.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 878 | 48.15 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 975 | 48.24 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 998 | 48.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 1000 | 48.26 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |