Os01g0173100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Alba, DNA/RNA-binding protein family protein.
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Os01g0173100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Alba, DNA/RNA-binding protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.92 | 0.204 | 12.9 | -0.351 | 0.391 | -0.126 | 0.0913 | -1.36 | -0.107 | 6.92 | 1005 | 17338 | -- | -- |
| 20.69 | 0.212 | 12.8 | -0.205 | 0.381 | -0.194 | 0.0944 | -- | -0.119 | 7.04 | 1004 | 11615 | -- | -- |
| 18.94 | 0.203 | 12.9 | -0.35 | 0.391 | -0.125 | -- | -1.36 | -0.107 | 6.89 | 1005 | 17337 | -- | -- |
| 20.41 | 0.21 | 12.8 | -0.197 | 0.394 | -0.26 | -- | -- | -0.119 | 6.89 | 1003 | 6924 | -- | -- |
| 26.97 | 0.242 | 12.9 | -0.358 | -- | -0.142 | -- | -1.35 | -0.11 | -- | 1005 | 17596 | -- | -- |
| 21.45 | 0.217 | 12.8 | -0.236 | 0.39 | -- | 0.105 | -- | -0.0783 | 6.94 | -- | -- | -- | -- |
| 21.48 | 0.217 | 12.8 | -0.234 | 0.391 | -- | -- | -- | -0.0786 | 6.9 | -- | -- | -- | -- |
| 28.37 | 0.248 | 12.9 | -0.203 | -- | -0.265 | -- | -- | -0.106 | -- | 1003 | 6010 | -- | -- |
| 21.55 | 0.216 | 12.8 | -- | 0.393 | -0.289 | -- | -- | -0.103 | 6.95 | 1003 | 6924 | -- | -- |
| 29.48 | 0.254 | 12.8 | -0.226 | -- | -- | -- | -- | -0.0712 | -- | -- | -- | -- | -- |
| 22.92 | 0.224 | 12.8 | -- | 0.388 | -- | -- | -- | -0.0525 | 6.94 | -- | -- | -- | -- |
| 29.28 | 0.252 | 12.8 | -- | -- | -0.272 | -- | -- | -0.0753 | -- | 1002 | 3772 | -- | -- |
| 30.83 | 0.259 | 12.8 | -- | -- | -- | -- | -- | -0.0461 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.71 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 2 | 18.72 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 3 | 18.73 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 4 | 5 |
| 6 | 18.77 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 6 |
| 7 | 18.79 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 10 | 18.83 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 7 |
| 11 | 18.84 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 6 |
| 15 | 18.87 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 22 | 18.91 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 5 | 4 |
| 23 | 18.92 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 28 | 18.95 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 35 | 18.97 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 39 | 18.98 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 43 | 18.99 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 47 | 19.00 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 5 | 3 |
| 56 | 19.03 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 57 | 19.03 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 65 | 19.06 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 4 | 5 |
| 66 | 19.07 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 67 | 19.07 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 69 | 19.07 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 19 |
| 71 | 19.08 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 1 | 9 |
| 76 | 19.11 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 21 |
| 81 | 19.12 | wind | 5.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 85 | 19.12 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 19 |
| 86 | 19.13 | wind | 5.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 92 | 19.13 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 4 | 6 |
| 100 | 19.14 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 1 | 9 |
| 102 | 19.14 | wind | 1.0 | 270 | > th | dose independent | rect. | 10 | 17 |
| 110 | 19.15 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 112 | 19.16 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 116 | 19.16 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 120 | 19.16 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 13 |
| 122 | 19.17 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 129 | 19.18 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 132 | 19.18 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 7 |
| 143 | 19.18 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 5 | 5 |
| 146 | 19.19 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 157 | 19.19 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 14 | 14 |
| 167 | 19.20 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 177 | 19.20 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 9 |
| 183 | 19.20 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 16 | 12 |
| 202 | 19.21 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 5 | 3 |
| 209 | 19.21 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 6 |
| 226 | 19.21 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 230 | 19.21 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 6 |
| 232 | 19.22 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 275 | 19.23 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 14 | NA |
| 279 | 19.23 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 308 | 19.23 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 7 |
| 311 | 19.24 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 336 | 19.24 | radiation | 1.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 338 | 19.24 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 6 | 5 |
| 344 | 19.24 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 23 | 13 |
| 345 | 19.25 | temperature | 25.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 350 | 19.25 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 363 | 19.25 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 18 |
| 381 | 19.26 | atmosphere | 1005.0 | 43200 | < th | dose independent | sin | 15 | NA |
| 399 | 19.26 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 23 | 20 |
| 406 | 19.26 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 417 | 19.27 | radiation | 1.0 | 90 | > th | dose independent | sin | 7 | NA |
| 457 | 19.27 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 23 | 11 |
| 470 | 19.28 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 511 | 19.29 | radiation | 1.0 | 90 | < th | dose independent | sin | 8 | NA |
| 517 | 19.29 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 522 | 19.29 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 524 | 19.29 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 526 | 19.29 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 555 | 19.29 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 561 | 19.29 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 563 | 19.29 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 565 | 19.29 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 3 |
| 566 | 19.29 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 6 | 4 |
| 595 | 19.30 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 606 | 19.30 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 11 | 8 |
| 667 | 19.30 | humidity | 90.0 | 1440 | > th | dose dependent | sin | 3 | NA |
| 668 | 19.30 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 685 | 19.30 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 24 | 16 |
| 687 | 19.31 | temperature | 25.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 688 | 19.31 | atmosphere | 1005.0 | 43200 | > th | dose independent | no | NA | NA |
| 693 | 19.31 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 722 | 19.31 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 731 | 19.31 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 23 | 20 |
| 742 | 19.31 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 753 | 19.31 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 13 | 7 |
| 770 | 19.32 | radiation | 1.0 | 4320 | > th | dose independent | sin | 6 | NA |
| 772 | 19.32 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 783 | 19.32 | radiation | 20.0 | 10 | < th | dose independent | rect. | 6 | 4 |
| 790 | 19.32 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 11 | 8 |
| 836 | 19.32 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 7 | NA |
| 851 | 19.33 | radiation | 1.0 | 4320 | < th | dose independent | sin | 6 | NA |
| 852 | 19.33 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 854 | 19.33 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 929 | 19.33 | radiation | 1.0 | 90 | < th | dose independent | rect. | 24 | 16 |
| 952 | 19.33 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 18 | 23 |
| 971 | 19.33 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 24 | 20 |
| 979 | 19.34 | wind | 5.0 | 14400 | < th | dose independent | rect. | 14 | 3 |