BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0173100 Os01g0173100|AK121114
(152 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0173100 Alba, DNA/RNA-binding protein family protein 212 1e-55
Os06g0602600 Alba, DNA/RNA-binding protein family protein 168 1e-42
Os12g0489300 Alba, DNA/RNA-binding protein family protein 137 2e-33
Os02g0202500 Conserved hypothetical protein 80 5e-16
>Os01g0173100 Alba, DNA/RNA-binding protein family protein
Length = 152
Score = 212 bits (539), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/136 (80%), Positives = 110/136 (80%)
Query: 1 MAVEEITEGVRNLXXXXXXXXXXXXXXXXXXXXXXXXXXSSSNRIQVSNTKKPLFFYVNL 60
MAVEEITEGVRNL SSSNRIQVSNTKKPLFFYVNL
Sbjct: 1 MAVEEITEGVRNLAVEGEPAAAAAAAGGGGEGAQRRAAGSSSNRIQVSNTKKPLFFYVNL 60
Query: 61 AKRYMQQHGDVELSALGMAIATVVTVAEILKNNGFAVEKKIRTSTVEINDESRVRPLQKA 120
AKRYMQQHGDVELSALGMAIATVVTVAEILKNNGFAVEKKIRTSTVEINDESRVRPLQKA
Sbjct: 61 AKRYMQQHGDVELSALGMAIATVVTVAEILKNNGFAVEKKIRTSTVEINDESRVRPLQKA 120
Query: 121 KIEIVLEKSEKFDELM 136
KIEIVLEKSEKFDELM
Sbjct: 121 KIEIVLEKSEKFDELM 136
>Os06g0602600 Alba, DNA/RNA-binding protein family protein
Length = 132
Score = 168 bits (426), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/94 (86%), Positives = 88/94 (93%)
Query: 43 NRIQVSNTKKPLFFYVNLAKRYMQQHGDVELSALGMAIATVVTVAEILKNNGFAVEKKIR 102
NRIQVSNTKKPLFFYVNLAKRYMQQH +VELSALGMAIATVVTVAEILKNNG AVEKKI
Sbjct: 20 NRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIM 79
Query: 103 TSTVEINDESRVRPLQKAKIEIVLEKSEKFDELM 136
TSTV++ D+SR RP+QKAKIEI+L K+EKFDELM
Sbjct: 80 TSTVDVKDDSRSRPMQKAKIEILLGKTEKFDELM 113
>Os12g0489300 Alba, DNA/RNA-binding protein family protein
Length = 169
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 78/94 (82%)
Query: 43 NRIQVSNTKKPLFFYVNLAKRYMQQHGDVELSALGMAIATVVTVAEILKNNGFAVEKKIR 102
NRIQVS KKPL+FYVNLAKRYMQ + +VELSALGMAI TVVTVAEILKNNG A EKKI
Sbjct: 59 NRIQVSTNKKPLYFYVNLAKRYMQNYDEVELSALGMAIGTVVTVAEILKNNGLATEKKIL 118
Query: 103 TSTVEINDESRVRPLQKAKIEIVLEKSEKFDELM 136
TST+ DES+ R ++KAKIEI+L KSE F+ +M
Sbjct: 119 TSTIGTKDESKGRLVRKAKIEILLCKSENFNSIM 152
>Os02g0202500 Conserved hypothetical protein
Length = 69
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 44/49 (89%)
Query: 88 EILKNNGFAVEKKIRTSTVEINDESRVRPLQKAKIEIVLEKSEKFDELM 136
EILKNNG AVEKKI TSTV++ D+SR RP+QKAKIEIVL K++KFDELM
Sbjct: 1 EILKNNGLAVEKKIMTSTVDVKDDSRSRPMQKAKIEIVLGKTDKFDELM 49
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.129 0.331
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,628,132
Number of extensions: 68263
Number of successful extensions: 139
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 4
Length of query: 152
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 60
Effective length of database: 12,232,113
Effective search space: 733926780
Effective search space used: 733926780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 151 (62.8 bits)