Os02g0202500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0202500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.25 | 0.449 | 13.5 | 0.323 | 1.11 | 1.51 | 0.369 | -2.34 | 0.0105 | 20.9 | 19.58 | 231 | -- | -- |
| 95.34 | 0.455 | 13.5 | 0.739 | 1.11 | 1.46 | 0.252 | -- | 0.135 | 20.8 | 17.97 | 229 | -- | -- |
| 91.62 | 0.446 | 13.5 | 0.317 | 1.12 | 1.52 | -- | -2.33 | 0.0134 | 20.9 | 19.69 | 213 | -- | -- |
| 95.63 | 0.455 | 13.5 | 0.726 | 1.13 | 1.46 | -- | -- | 0.137 | 20.8 | 17.9 | 219 | -- | -- |
| 136.13 | 0.543 | 13.5 | 0.0156 | -- | 2.03 | -- | -2.79 | -0.174 | -- | 20.95 | 519 | -- | -- |
| 125.94 | 0.526 | 13.4 | 1.07 | 1.4 | -- | 0.209 | -- | 0.371 | 19.5 | -- | -- | -- | -- |
| 126.05 | 0.526 | 13.4 | 1.07 | 1.4 | -- | -- | -- | 0.372 | 19.5 | -- | -- | -- | -- |
| 141.37 | 0.554 | 13.5 | 0.539 | -- | 2.04 | -- | -- | 0.00651 | -- | 18.1 | 521 | -- | -- |
| 107.69 | 0.483 | 13.5 | -- | 1.11 | 1.97 | -- | -- | 0.024 | 21.1 | 15.2 | 219 | -- | -- |
| 231.17 | 0.71 | 13.4 | 1.05 | -- | -- | -- | -- | 0.35 | -- | -- | -- | -- | -- |
| 156.15 | 0.585 | 13.4 | -- | 1.39 | -- | -- | -- | 0.253 | 19.6 | -- | -- | -- | -- |
| 148.41 | 0.567 | 13.5 | -- | -- | 2.24 | -- | -- | -0.0728 | -- | 17.59 | 537 | -- | -- |
| 260.12 | 0.753 | 13.4 | -- | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 2 | 85.75 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 3 | 85.78 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 58 | 89.71 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 62 | 89.89 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 16 |
| 91 | 90.62 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 109 | 91.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 127 | 91.63 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 129 | 91.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 21 |
| 176 | 92.69 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 221 | 93.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 227 | 93.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 260 | 93.59 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 282 | 93.77 | temperature | 20 | 270 | > th | dose dependent | sin | 6 | NA |
| 314 | 94.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 326 | 94.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 397 | 94.91 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 403 | 94.93 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 411 | 95.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 439 | 95.20 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 462 | 95.38 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 468 | 95.42 | temperature | 10 | 270 | > th | dose dependent | sin | 5 | NA |
| 572 | 95.93 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 657 | 96.28 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 11 |
| 729 | 96.47 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 730 | 96.47 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 16 |
| 824 | 96.61 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 826 | 96.61 | temperature | 25 | 4320 | < th | dose independent | rect. | 14 | 8 |
| 882 | 96.68 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 895 | 96.70 | temperature | 25 | 4320 | < th | dose independent | sin | 17 | NA |
| 899 | 96.70 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 15 |
| 909 | 96.71 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 978 | 96.76 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 19 |
| 988 | 96.77 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 13 |