BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0199500 Os02g0199500|AK071208
         (436 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0199500  Cyclin-like F-box domain containing protein         823   0.0  
Os09g0372900  Cyclin-like F-box domain containing protein          97   3e-20
Os09g0479100  Cyclin-like F-box domain containing protein          86   4e-17

>Os02g0199500 Cyclin-like F-box domain containing protein
          Length = 436

 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/436 (91%), Positives = 398/436 (91%)

Query: 1   MEDNNDEILDGQNEEVQSQVSLPQDIQRIIIGFLPGRTVLKFCSVCKFWRDCIVEPAFVD 60
           MEDNNDEILDGQNEEVQSQVSLPQDIQRIIIGFLPGRTVLKFCSVCKFWRDCIVEPAFVD
Sbjct: 1   MEDNNDEILDGQNEEVQSQVSLPQDIQRIIIGFLPGRTVLKFCSVCKFWRDCIVEPAFVD 60

Query: 61  HHLNCALRFRQAIACFTSVDNGLVQMYMFDPITVNFKRTEPVFSSRFHMSQPCNGMVCAY 120
           HHLNCALRFRQAIACFTSVDNGLVQMYMFDPITVNFKRTEPVFSSRFHMSQPCNGMVCAY
Sbjct: 61  HHLNCALRFRQAIACFTSVDNGLVQMYMFDPITVNFKRTEPVFSSRFHMSQPCNGMVCAY 120

Query: 121 DLKGAAEVLNPTTRKHLTLPASESVYQAQYSEYFLGYVHSTKEYKVVALRHWIKHLTFEV 180
           DLKGAAEVLNPTTRKHLTLPASESVYQAQYSEYFLGYVHSTKEYKVVALRHWIKHLTFEV
Sbjct: 121 DLKGAAEVLNPTTRKHLTLPASESVYQAQYSEYFLGYVHSTKEYKVVALRHWIKHLTFEV 180

Query: 181 CTIGTLSWRTVRGSEEEELLKTTKPVVVNDEMHWLLLDDESSHFTRKILSFNLTDEKFSY 240
           CTIGTLSWRTVRGSEEEELLKTTKPVVVNDEMHWLLLDDESSHFTRKILSFNLTDEKFSY
Sbjct: 181 CTIGTLSWRTVRGSEEEELLKTTKPVVVNDEMHWLLLDDESSHFTRKILSFNLTDEKFSY 240

Query: 241 LDVPDSVRDRDLELVEGEGKLHLWSMPCKGAAYTESEIWLADSTRQFWVHLHNIAHPSVL 300
           LDVPDSVRDRDLELVEGEGKLHLWSMPCKGAAYTESEIWLADSTRQFWVHLHNIAHPSVL
Sbjct: 241 LDVPDSVRDRDLELVEGEGKLHLWSMPCKGAAYTESEIWLADSTRQFWVHLHNIAHPSVL 300

Query: 301 GTKPFFMYKSKLFLGSQKRFIYIDILDGTVCYVDIPSGENIISSGMFVESFVPALTGTGL 360
           GTKPFFMYKSKLFLGSQKRFIYIDILDGTVCYVDIPSGENIISSGMFVESFVPALTGTGL
Sbjct: 301 GTKPFFMYKSKLFLGSQKRFIYIDILDGTVCYVDIPSGENIISSGMFVESFVPALTGTGL 360

Query: 361 VNSMTLLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVQSSKRAKRTINL 420
           VNSMTLLT                                      VVQSSKRAKRTINL
Sbjct: 361 VNSMTLLTGSRYAGSSSRGSGPSSRAAGSSSTRTRRSPAASRWSSAVVQSSKRAKRTINL 420

Query: 421 VWKMYTEGTSKIQQGL 436
           VWKMYTEGTSKIQQGL
Sbjct: 421 VWKMYTEGTSKIQQGL 436



>Os09g0372900 Cyclin-like F-box domain containing protein
          Length = 379

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 153/355 (43%), Gaps = 34/355 (9%)

Query: 22  LPQDIQRIIIGFLPGRTVLKFCSVCKFWRDCIVEPAFVDHHLNCALRFRQAIACFTS--V 79
           L  D+   +   LP RT+     VCK W   + +P FV  HL    R +Q +  F +   
Sbjct: 25  LCSDVLTEVFHRLPARTLASCRLVCKSWMSELTDPHFVHEHLK---RSQQKLLLFANDKA 81

Query: 80  DNGLVQMYMFDPITVNFKRTEPVFSSRFHMSQPCNGMVCAYDLKGAAEVLNPTTRKHLTL 139
           ++  + M + D     ++ T P+ S    +   CNG++C  D  GA ++LNPTT +  TL
Sbjct: 82  NDRSLAMVLADDTGATYQLTRPMASRSLFVHNSCNGLLCLGDSTGAVQLLNPTTGESATL 141

Query: 140 PASESVYQAQYSEY------FLGYVHSTKEYKVVALRHWIKHLTFEVC----TIGTLSWR 189
           P    +Y A  S++       LG+  STKE+KVV         +F VC    TIG  SWR
Sbjct: 142 PM--PMYTAGSSQFSSCNWHCLGFCPSTKEHKVVHFYLGAHFDSFNVCCEIFTIGDKSWR 199

Query: 190 TVRGSEEEELLKTTKPVVVNDEMHWLLLDDESSHFTRKILSFNLTDEKFSYLDVPD-SVR 248
            + GS       T + V VN  +++L      +  + +I   NL  E F  + +P     
Sbjct: 200 QI-GSFHGA--PTDRGVHVNGAVYYLTKFRYIA--SSRINCLNLESENFDVMMLPPRKSY 254

Query: 249 DRDLELVEGEGKLHLWSMPC--KGAAYTESEIWLADSTRQFWVHLHNIAHPSVLGTKPFF 306
                L E EGKL L  +         T   + L    +  W H ++I+ P ++ +  +F
Sbjct: 255 GGHCSLAELEGKLCLLVVEGGHDNPPRTMDILMLDSGDKTTWTHRYHISLPWLMPSC-YF 313

Query: 307 MYKSKLF--------LGSQKRFIYIDILDGTVCYVDIPSGENIISSGMFVESFVP 353
             K  LF        L ++  + Y      T   +  P  E   S+  F+ES VP
Sbjct: 314 TPKHTLFHEGKIWVQLLARNLYCYDPSSSSTELKMACPESEFPFSTHTFIESIVP 368



>Os09g0479100 Cyclin-like F-box domain containing protein
          Length = 503

 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 158/385 (41%), Gaps = 67/385 (17%)

Query: 22  LPQDIQRIIIGFLPGRTVLKFCSVCKFWRDCIVEPAFVDHHLNCALRFRQAIACFTSVDN 81
           LPQDI  +I+  LP  T+L+   VCK W   I +P F   H+  A R       F   +N
Sbjct: 20  LPQDIVELILLRLPVSTLLRCRGVCKQWDGIIRDPQFAMVHIQRAPR---RPLFFFQREN 76

Query: 82  GLVQMY-----MFDPITVNFKRTEPVFSSRFHMSQPCNGMVCAYDLKGAAEVLNPTTRK- 135
            +  +Y     +FD      K   PV      +   CNG++C +  K   ++ N  T + 
Sbjct: 77  LVHLLYPSEAILFDEAWSPSKWVVPVIEPDDFLCASCNGLICLHSDKSTIKIANLATGEC 136

Query: 136 -HLTLPASESVYQAQYSEYFLGYVHSTKEYKVVALRHWIK--HL-------TFEVCTIGT 185
            HL  P   S     +S Y  G+   TK+YKV+   H+++  HL         +V T+G 
Sbjct: 137 MHLVKPVRNS-KTDHFSYYSFGFHPVTKQYKVM---HFLRDEHLHVGTSFSIIQVYTLGD 192

Query: 186 LSWRTVRGSEEEELLKTTKPVVVN--DEMHWLLLDDESSHFTRKILSFNLTDEKFSYLDV 243
             WR VR  +   L    +  VVN    M+W L +DE S +   +++F+L++E F +L +
Sbjct: 193 EKWRDVRTPQALSLRCVERSGVVNVGGAMYW-LTEDEESVWKHAVVTFDLSEELFQWLQL 251

Query: 244 PD------SVRDRDLELVE-----------GEGKLHLWSMPCKGAAYTESEIWLADSTRQ 286
           P        + D D  L+              GKLH+W++  K                Q
Sbjct: 252 PAVDPANYVLGDPDQWLITEVDSNVSVSYYETGKLHIWTIDSK--------------IEQ 297

Query: 287 FWVHLHNIAHPSVLGTKPFFMYKSKLFLGSQKRFIYIDILDGTVCYVDIP--------SG 338
            W   +NI    +    P ++   K+ L    + +Y   L G    ++          S 
Sbjct: 298 SWSQKYNIRLSMLEVPGPHWICGDKIILHDFNKNLYFYELMGKNSEIESSKLVKQLRFSP 357

Query: 339 ENIISSGMFVESFV--PALTGTGLV 361
            N +   MFV+S V   A    G+V
Sbjct: 358 RNNMQCFMFVKSLVRLDAFRKAGVV 382



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,611,264
Number of extensions: 556285
Number of successful extensions: 1285
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1280
Number of HSP's successfully gapped: 3
Length of query: 436
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 332
Effective length of database: 11,605,545
Effective search space: 3853040940
Effective search space used: 3853040940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)