Os09g0479100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os09g0479100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.19 | 0.343 | 8.88 | -0.75 | 0.407 | -0.497 | -1.45 | -0.352 | 0.0959 | 16.7 | 24.79 | 765 | -- | -- |
| 53.43 | 0.34 | 8.88 | -0.845 | 0.399 | -0.52 | -1.5 | -- | 0.0732 | 16.5 | 24.7 | 770 | -- | -- |
| 56.37 | 0.35 | 8.86 | -0.675 | 0.56 | -0.392 | -- | -0.622 | 0.181 | 18.4 | 24.8 | 998 | -- | -- |
| 56.97 | 0.352 | 8.9 | -0.842 | 0.445 | -0.452 | -- | -- | 0.0662 | 18.2 | 24.8 | 760 | -- | -- |
| 65.68 | 0.377 | 8.9 | -0.826 | -- | -0.51 | -- | 0.264 | 0.0926 | -- | 25 | 603 | -- | -- |
| 62.39 | 0.37 | 8.86 | -0.703 | 0.587 | -- | -0.318 | -- | 0.254 | 18.9 | -- | -- | -- | -- |
| 62.49 | 0.37 | 8.86 | -0.699 | 0.585 | -- | -- | -- | 0.252 | 19.2 | -- | -- | -- | -- |
| 64.76 | 0.375 | 8.89 | -0.876 | -- | -0.543 | -- | -- | 0.0208 | -- | 24.7 | 552 | -- | -- |
| 73.64 | 0.4 | 8.86 | -- | 0.52 | -0.206 | -- | -- | 0.26 | 18.8 | 24.8 | 765 | -- | -- |
| 80.64 | 0.42 | 8.85 | -0.71 | -- | -- | -- | -- | 0.242 | -- | -- | -- | -- | -- |
| 75.37 | 0.406 | 8.84 | -- | 0.592 | -- | -- | -- | 0.33 | 19.2 | -- | -- | -- | -- |
| 84 | 0.427 | 8.86 | -- | -- | -0.413 | -- | -- | 0.18 | -- | 24.9 | 505 | -- | -- |
| 93.92 | 0.452 | 8.83 | -- | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 6 | 43.41 | temperature | 30 | 30 | < th | dose dependent | rect. | 16 | 17 |
| 28 | 44.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 110 | 46.24 | temperature | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 119 | 46.35 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 11 |
| 184 | 47.09 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 185 | 47.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 195 | 47.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 6 |
| 205 | 47.27 | temperature | 30 | 270 | < th | dose dependent | sin | 12 | NA |
| 247 | 47.55 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 249 | 47.55 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 262 | 47.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 389 | 48.18 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 408 | 48.23 | temperature | 20 | 30 | > th | dose independent | rect. | 21 | 8 |
| 452 | 48.41 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 15 |
| 466 | 48.46 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 15 |
| 502 | 48.58 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 13 |
| 524 | 48.65 | temperature | 20 | 270 | > th | dose independent | sin | 15 | NA |
| 526 | 48.65 | temperature | 10 | 720 | > th | dose dependent | sin | 17 | NA |
| 542 | 48.72 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 10 |
| 545 | 48.72 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 15 |
| 605 | 48.92 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 7 |
| 632 | 48.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 633 | 49.00 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 746 | 49.22 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 802 | 49.35 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 877 | 49.55 | humidity | 90 | 720 | < th | dose independent | rect. | 17 | 1 |
| 935 | 49.64 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 17 |