BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0179200 Os02g0179200|AK111348
         (299 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0179200  Glutamine amidotransferase class-I domain cont...   564   e-161
Os09g0424200  Glutamine amidotransferase class-I domain cont...   274   6e-74
Os03g0685300  Glutamine amidotransferase class-I domain cont...   226   2e-59

>Os02g0179200 Glutamine amidotransferase class-I domain containing protein
          Length = 299

 Score =  564 bits (1454), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 275/285 (96%), Positives = 275/285 (96%)

Query: 15  RRYALLLALNDSEYARKVYGGYGNVFVSALXXXXXXXXXXRWDCFRVIDGEFPAAEEVGR 74
           RRYALLLALNDSEYARKVYGGYGNVFVSAL          RWDCFRVIDGEFPAAEEVGR
Sbjct: 15  RRYALLLALNDSEYARKVYGGYGNVFVSALGGGGGGGEEERWDCFRVIDGEFPAAEEVGR 74

Query: 75  YEGFVVSGSPHDAYGDERWILRLCSLLRALHAMGKRILGICFGHQVLCRALGGRIGKARS 134
           YEGFVVSGSPHDAYGDERWILRLCSLLRALHAMGKRILGICFGHQVLCRALGGRIGKARS
Sbjct: 75  YEGFVVSGSPHDAYGDERWILRLCSLLRALHAMGKRILGICFGHQVLCRALGGRIGKARS 134

Query: 135 GWNIGVKKMTFVRDFEGSKLFGDLKEIPQSASIIEVHQDEVLEVPPMGRVLAYSDKTPVE 194
           GWNIGVKKMTFVRDFEGSKLFGDLKEIPQSASIIEVHQDEVLEVPPMGRVLAYSDKTPVE
Sbjct: 135 GWNIGVKKMTFVRDFEGSKLFGDLKEIPQSASIIEVHQDEVLEVPPMGRVLAYSDKTPVE 194

Query: 195 MFAVGDNVLGIQGHPEYTSDILLNLIDRLVNNNTITSGIGEEARRTVEASEPDRRFWTGL 254
           MFAVGDNVLGIQGHPEYTSDILLNLIDRLVNNNTITSGIGEEARRTVEASEPDRRFWTGL
Sbjct: 195 MFAVGDNVLGIQGHPEYTSDILLNLIDRLVNNNTITSGIGEEARRTVEASEPDRRFWTGL 254

Query: 255 CKGFLKRPTAATTVDMPPREVAPEMMSCSHIIAGGHFVATTPIGL 299
           CKGFLKRPTAATTVDMPPREVAPEMMSCSHIIAGGHFVATTPIGL
Sbjct: 255 CKGFLKRPTAATTVDMPPREVAPEMMSCSHIIAGGHFVATTPIGL 299



>Os09g0424200 Glutamine amidotransferase class-I domain containing protein
          Length = 272

 Score =  274 bits (701), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 137/243 (56%), Positives = 165/243 (67%), Gaps = 7/243 (2%)

Query: 25  DSEYARKVYGGYGNVFVSALXXXXXXXXX--XRWDCFRVIDGEFPAAEEVGRYEGFVVSG 82
           DS+Y RKVYGGY  VF+ A              WD FR +DGE P A+EV  Y+GFV+SG
Sbjct: 26  DSDYVRKVYGGYLEVFIRAFGDDGDVGDGGGEEWDMFRAVDGELPGADEVDGYDGFVISG 85

Query: 83  SPHDAYGDERWILRLCSLLRALHAMGKRILGICFGHQVLCRALGGRIGKARSGWNIGVKK 142
           SPHDAY D+ WILRLC L+R L AM KR+LGICFGHQV+CRALGGR+GKAR GW+IG+++
Sbjct: 86  SPHDAYADDLWILRLCLLVRDLVAMRKRLLGICFGHQVICRALGGRVGKARGGWDIGIRE 145

Query: 143 MTFVRDFEGSKLFGD-LKEIPQSAS----IIEVHQDEVLEVPPMGRVLAYSDKTPVEMFA 197
           +         +   D L+ I  +A+    I EVHQDEV E+P    VLA S KT VEMF 
Sbjct: 146 VAMAESLPPYRFLDDALQGITAAAAPYAKITEVHQDEVWELPAGAEVLASSSKTGVEMFC 205

Query: 198 VGDNVLGIQGHPEYTSDILLNLIDRLVNNNTITSGIGEEARRTVEASEPDRRFWTGLCKG 257
            GD VLGIQGHPEYT+DILLNL+DRL +  +IT  + E  RR +E + PDR FW  LCK 
Sbjct: 206 AGDRVLGIQGHPEYTADILLNLVDRLSSAGSITMAVAEGVRRQLEDTGPDREFWIKLCKS 265

Query: 258 FLK 260
           FLK
Sbjct: 266 FLK 268



>Os03g0685300 Glutamine amidotransferase class-I domain containing protein
          Length = 293

 Score =  226 bits (575), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/237 (47%), Positives = 152/237 (64%), Gaps = 8/237 (3%)

Query: 24  NDSEYARKVYGGYGNVFVSALXXXXXXXXXXRWDCFRVIDGEFPAAEEVGRYEGFVVSGS 83
            DSEY RK YGGY  VF + L          RW  +R + GE P  EE    +GFV+SGS
Sbjct: 40  EDSEYVRKAYGGYFEVFRALLAEDGE-----RWRVYRAVRGELPGEEEAAGIDGFVISGS 94

Query: 84  PHDAYGDERWILRLCSLLRALHAMGKRILGICFGHQVLCRALGGRIGKARSGWNIGVKKM 143
             DA+ D+ WI+ L  L+R  +A GKRILG+CFGHQVLCRALGG+ G+++ GW+IGV  +
Sbjct: 95  CSDAHADDPWIVALVDLIRRQNAAGKRILGVCFGHQVLCRALGGKTGRSKKGWDIGVNCI 154

Query: 144 TFVRDFEGSKLFGDLKEIPQSASIIEVHQDEVLEVPPMGRVLAYSDKTPVEMFAVGDNVL 203
                   ++LF  +K +P    IIE HQDEV E+PP   VLA SD T VEMF +GD  +
Sbjct: 155 HPTAAM--ARLFSPIK-LPVHMPIIEFHQDEVWELPPQAEVLARSDMTGVEMFRLGDRAM 211

Query: 204 GIQGHPEYTSDILLNLIDRLVNNNTITSGIGEEARRTVEASEPDRRFWTGLCKGFLK 260
           G+QGHPEY+ DIL+++ DRL+ N+ I     ++A+ + +  +PD+  W  +C+GFLK
Sbjct: 212 GVQGHPEYSKDILMSIADRLLRNDLILDHQVDKAKASFDLRQPDKDLWKKVCRGFLK 268



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.140    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,353,491
Number of extensions: 436657
Number of successful extensions: 817
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 813
Number of HSP's successfully gapped: 3
Length of query: 299
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 199
Effective length of database: 11,814,401
Effective search space: 2351065799
Effective search space used: 2351065799
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)