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Os03g0685300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glutamine amidotransferase class-I domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.91 (0.0442) R2 : 0.728
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.7 (0.116) R2dC : 0.618 R2C : 0.538
β3 : -1.99 (0.115) R2dE : 0.183 R2E : 0.111
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.199 (0.0932) R2dN8 : 0.00348 R2N8 : 0.00177
σ : 0.83
deviance : 317.89
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_____
C
peak time of C : 5.13
E
wheather : temperature
threshold : 8.337
memory length : 44
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.5
open length of G : 8.03

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
312.83 0.831 9.9 0.317 3.69 -1.97 0.571 -1.27 -0.165 5.17 8.571 75 19.2 8
314.77 0.826 9.9 0.392 3.7 -1.98 0.598 -- -0.13 5.2 10.37 52 19.5 8
311.89 0.823 9.91 0.31 3.72 -1.93 -- -1.07 -0.167 5.15 7.669 53 19.4 8.03
314.73 0.826 9.9 0.351 3.69 -2 -- -- -0.145 5.18 9.699 45 19.5 8
596.5 1.14 9.91 0.539 -- -3.2 -- -0.576 0.089 -- 5.359 7 14.8 11.1
381.02 0.915 9.89 0.299 3.84 -- 1.26 -- -0.25 6.69 -- -- -- --
384.97 0.919 9.89 0.318 3.85 -- -- -- -0.254 6.67 -- -- -- --
542.1 1.08 9.92 0.59 -- -3.33 -- -- 0.138 -- 5.304 35 13.6 11.3
317.89 0.83 9.91 -- 3.7 -1.99 -- -- -0.199 5.13 8.337 44 19.5 8.03
1158.3 1.59 9.97 0.408 -- -- -- -- -0.177 -- -- -- -- --
387.63 0.921 9.9 -- 3.85 -- -- -- -0.29 6.66 -- -- -- --
534.17 1.08 9.94 -- -- -3.3 -- -- -0.0953 -- 1.386 30 13.7 12.1
1162.69 1.59 9.98 -- -- -- -- -- -0.222 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 315.51 temperature 10.0 90 > th dose dependent rect. 19 8
3 321.13 precipitation 0.1 90 < th dose independent rect. 19 8
4 321.13 precipitation 0.1 90 < th dose dependent rect. 19 8
5 321.31 wind 5.0 90 < th dose independent rect. 19 8
6 322.17 precipitation 0.1 90 < th dose independent rect. 3 16
7 322.17 precipitation 0.1 90 < th dose dependent rect. 3 16
8 322.41 temperature 15.0 90 > th dose independent rect. 19 8
9 322.86 wind 9.0 90 < th dose dependent rect. 19 8
10 323.05 temperature 15.0 90 > th dose independent rect. 3 16
11 323.11 radiation 1.0 90 < th dose dependent rect. 19 8
13 323.13 temperature 30.0 90 < th dose independent rect. 19 8
14 323.13 humidity 50.0 90 > th dose independent rect. 19 8
16 323.13 atmosphere 995.0 90 > th dose independent rect. 19 8
17 323.13 radiation 1.0 90 < th dose independent rect. 19 8
23 323.13 atmosphere 1015.0 90 < th dose independent rect. 3 16
30 324.32 atmosphere 1015.0 90 < th dose independent rect. 19 8
33 325.48 wind 9.0 90 < th dose independent rect. 3 16
36 326.90 radiation 40.0 90 < th dose dependent rect. 3 16
46 328.83 radiation 40.0 270 < th dose independent rect. 14 15
49 329.95 temperature 15.0 270 > th dose dependent rect. 2 3
51 330.06 radiation 40.0 90 < th dose independent rect. 3 16
53 330.62 precipitation 0.1 270 < th dose independent rect. 5 9
54 330.62 precipitation 0.1 270 < th dose dependent rect. 5 9
55 330.68 temperature 10.0 270 > th dose independent rect. 5 9
56 330.68 atmosphere 995.0 270 > th dose independent rect. 5 9
57 330.68 atmosphere 1015.0 270 < th dose independent rect. 5 9
58 330.68 temperature 10.0 270 > th dose independent rect. 14 15
59 330.68 temperature 15.0 10 > th dose dependent rect. 20 7
66 330.88 atmosphere 995.0 90 > th dose dependent rect. 19 8
69 331.15 atmosphere 995.0 270 > th dose independent rect. 5 21
70 331.17 wind 9.0 270 < th dose independent rect. 5 9
74 331.42 radiation 40.0 90 < th dose dependent rect. 15 16
78 331.74 atmosphere 995.0 270 > th dose independent rect. 17 8
79 331.74 humidity 50.0 270 > th dose independent rect. 5 9
80 331.76 temperature 15.0 270 > th dose dependent rect. 1 5
85 332.20 temperature 15.0 270 > th dose dependent rect. 3 1
87 332.33 radiation 30.0 10 < th dose dependent rect. 15 16
92 332.47 wind 3.0 10 < th dose independent rect. 3 4
97 332.66 wind 5.0 30 < th dose dependent rect. 3 4
103 332.84 humidity 50.0 90 > th dose dependent rect. 19 8
105 332.92 radiation 1.0 10 > th dose independent rect. 7 9
122 333.41 wind 9.0 270 < th dose independent rect. 14 15
125 333.45 atmosphere 995.0 90 > th dose independent rect. 3 16
133 333.54 temperature 15.0 10 > th dose dependent rect. 3 4
138 333.58 precipitation 0.1 270 < th dose independent rect. 14 15
141 333.58 precipitation 0.1 270 < th dose dependent rect. 14 15
151 333.88 humidity 70.0 10 > th dose independent rect. 19 8
177 334.47 temperature 20.0 10 > th dose independent rect. 3 17
192 334.73 radiation 10.0 90 < th dose independent rect. 3 4
211 334.81 wind 3.0 10 < th dose independent rect. 3 6
221 334.93 humidity 80.0 90 > th dose independent rect. 3 4
227 334.96 atmosphere 995.0 90 > th dose independent rect. 7 20
228 335.00 wind 5.0 270 < th dose independent rect. 1 4
230 335.09 radiation 10.0 90 < th dose independent rect. 3 6
234 335.11 radiation 10.0 10 < th dose independent rect. 3 17
237 335.22 radiation 10.0 10 < th dose independent rect. 15 17
241 335.32 wind 5.0 10 < th dose dependent rect. 3 6
278 335.62 wind 9.0 90 < th dose dependent rect. 3 16
285 335.74 radiation 10.0 90 < th dose independent rect. 3 8
294 335.85 radiation 30.0 90 < th dose dependent rect. 3 4
295 335.89 radiation 10.0 10 < th dose independent rect. 3 5
299 335.92 radiation 30.0 90 < th dose dependent rect. 3 6
325 336.22 wind 9.0 10 < th dose independent rect. 7 9
326 336.22 radiation 30.0 10 < th dose independent rect. 16 15
327 336.24 humidity 50.0 90 > th dose dependent rect. 3 4
333 336.28 precipitation 0.1 10 < th dose independent rect. 7 9
334 336.28 precipitation 0.1 10 < th dose dependent rect. 7 9
336 336.30 humidity 50.0 10 > th dose independent rect. 16 15
337 336.32 precipitation 0.1 90 < th dose independent rect. 3 4
339 336.32 precipitation 0.1 90 < th dose dependent rect. 3 4
341 336.33 radiation 10.0 10 < th dose independent rect. 3 15
346 336.35 temperature 10.0 10 > th dose independent rect. 7 9
348 336.35 atmosphere 1015.0 10 < th dose independent rect. 7 9
349 336.35 temperature 10.0 10 > th dose independent rect. 16 15
353 336.36 radiation 30.0 90 < th dose dependent rect. 3 8
356 336.40 precipitation 0.1 10 < th dose independent rect. 7 20
358 336.40 precipitation 0.1 10 < th dose dependent rect. 7 20
364 336.46 wind 9.0 90 < th dose independent rect. 7 20
369 336.52 atmosphere 1015.0 90 < th dose independent rect. 7 20
393 336.74 temperature 20.0 270 > th dose independent rect. 2 3
426 337.20 temperature 10.0 90 > th dose independent rect. 3 4
428 337.20 temperature 30.0 90 < th dose independent rect. 3 4
429 337.20 humidity 50.0 90 > th dose independent rect. 3 4
431 337.20 atmosphere 995.0 90 > th dose independent rect. 3 4
432 337.20 atmosphere 1015.0 90 < th dose independent rect. 3 4
434 337.20 temperature 10.0 90 > th dose independent rect. 7 20
438 337.22 humidity 50.0 30 > th dose dependent rect. 3 16
443 337.27 precipitation 0.1 90 < th dose independent rect. 7 20
446 337.27 precipitation 0.1 90 < th dose dependent rect. 7 20
465 337.44 wind 5.0 270 < th dose independent rect. 3 1
475 337.51 precipitation 0.1 270 < th dose independent rect. 5 20
476 337.51 precipitation 0.1 270 < th dose dependent rect. 5 20
477 337.52 wind 9.0 270 < th dose independent rect. 5 20
482 337.57 atmosphere 1015.0 270 < th dose independent rect. 5 20
485 337.61 precipitation 0.1 270 < th dose independent rect. 1 4
486 337.61 precipitation 0.1 270 < th dose dependent rect. 1 4
488 337.65 radiation 30.0 10 < th dose dependent rect. 3 6
494 337.71 temperature 10.0 90 > th dose dependent rect. 3 16
505 337.77 radiation 10.0 270 < th dose dependent rect. 1 8
507 337.79 atmosphere 995.0 10 > th dose independent rect. 7 9
533 337.93 wind 7.0 270 < th dose dependent rect. 3 1
575 338.19 wind 9.0 10 < th dose independent rect. 7 20
596 338.35 radiation 1.0 270 < th dose independent rect. 1 4
598 338.36 radiation 10.0 270 < th dose independent rect. 1 8
600 338.38 radiation 10.0 270 < th dose dependent rect. 1 4
603 338.42 wind 9.0 30 < th dose independent rect. 16 15
613 338.48 temperature 10.0 270 > th dose independent rect. 1 4
615 338.48 temperature 30.0 270 < th dose independent rect. 1 4
616 338.48 humidity 50.0 270 > th dose independent rect. 1 4
619 338.48 atmosphere 995.0 270 > th dose independent rect. 1 4
620 338.48 atmosphere 1010.0 270 < th dose independent rect. 1 4
625 338.48 temperature 10.0 270 > th dose independent rect. 5 20
633 338.53 atmosphere 995.0 90 > th dose independent rect. 7 8
646 338.64 radiation 1.0 1440 < th dose dependent rect. 20 8
653 338.70 precipitation 0.1 30 < th dose independent rect. 16 15
655 338.70 precipitation 0.1 30 < th dose dependent rect. 16 15
657 338.71 temperature 10.0 1440 > th dose independent rect. 8 9
660 338.71 temperature 10.0 1440 > th dose independent rect. 17 15
691 338.91 precipitation 0.1 270 < th dose independent rect. 3 1
692 338.91 precipitation 0.1 270 < th dose dependent rect. 3 1
780 339.33 humidity 50.0 270 > th dose independent rect. 5 20
783 339.36 radiation 10.0 10 < th dose independent rect. 3 21
790 339.40 humidity 50.0 90 > th dose independent rect. 7 8
795 339.45 humidity 50.0 90 > th dose independent rect. 3 16
810 339.48 wind 1.0 270 > th dose independent rect. 18 7
814 339.48 radiation 1.0 90 < th dose dependent rect. 5 22
846 339.69 humidity 80.0 270 > th dose independent rect. 3 1
855 339.73 humidity 50.0 270 > th dose dependent rect. 3 1
858 339.74 humidity 70.0 90 > th dose dependent rect. 3 6
921 340.18 wind 9.0 270 < th dose independent rect. 4 23
942 340.31 wind 1.0 270 > th dose independent rect. 3 1