BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0685300 Os03g0685300|AK071046
(293 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G30550.1 | chr4:14925618-14926713 FORWARD LENGTH=250 225 2e-59
AT2G23970.1 | chr2:10199698-10201081 FORWARD LENGTH=252 219 9e-58
AT2G23960.1 | chr2:10196059-10197610 FORWARD LENGTH=252 207 7e-54
AT4G30530.1 | chr4:14920605-14922286 FORWARD LENGTH=251 202 2e-52
AT4G30540.1 | chr4:14923327-14925075 FORWARD LENGTH=249 194 4e-50
>AT4G30550.1 | chr4:14925618-14926713 FORWARD LENGTH=250
Length = 249
Score = 225 bits (573), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 151/232 (65%), Gaps = 3/232 (1%)
Query: 41 DSEYVRKAYGGYFEVFRALLAEDGERWRVYRAVRGELPGEEEAAGIDGFVISGSCSDAHA 100
DSE+V+K YGGYF VF + E+GE+W ++R + G+ P E + DGFVISGS DA
Sbjct: 18 DSEFVKKTYGGYFNVFVSTFGEEGEQWDLFRVIDGQFPDENDLDKYDGFVISGSPHDAFG 77
Query: 101 DDPWIVALVDLIRRQNAAGKRILGVCFGHQVLCRALGGKTGRSKKGWDIGVNCIHPTAAM 160
D WIV L ++ ++ + K++LG+CFGHQ++ R GGK GR+ KG D+G+ I
Sbjct: 78 DADWIVKLCEVCQKLDHMKKKVLGICFGHQIITRVKGGKIGRALKGADMGLRSITIAKDN 137
Query: 161 ARL---FSPIKLPVHMPIIEFHQDEVWELPPQAEVLARSDMTGVEMFRLGDRAMGVQGHP 217
+L F +++P + II+ HQDEV ELP A +LA S++ VEMF +GD +QGHP
Sbjct: 138 EKLRGYFGDVEVPASLAIIKCHQDEVLELPESATLLASSEVCNVEMFSIGDHFFCIQGHP 197
Query: 218 EYSKDILMSIADRLLRNDLILDHQVDKAKASFDLRQPDKDLWKKVCRGFLKG 269
EY+K+IL I DR+L L+ DKAK++ + QPD+ LW+K+C+ FLKG
Sbjct: 198 EYNKEILFEIVDRVLNMKLMEQEFADKAKSTMETAQPDRILWQKLCKNFLKG 249
>AT2G23970.1 | chr2:10199698-10201081 FORWARD LENGTH=252
Length = 251
Score = 219 bits (559), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 149/232 (64%), Gaps = 2/232 (0%)
Query: 41 DSEYVRKAYGGYFEVFRALLAEDGERWRVYRAVRGELPGEEEAAGIDGFVISGSCSDAHA 100
DS +V+KAYGGYF VF + EDGE+W ++R + GE P +++ DGFVISGS +DA
Sbjct: 16 DSTFVKKAYGGYFNVFVSTFGEDGEQWDLFRVIDGEFPDDKDLDKYDGFVISGSLNDAFG 75
Query: 101 DDPWIVALVDLIRRQNAAGKRILGVCFGHQVLCRALGGKTGRSKKGWDIGVNCIHPTAAM 160
DD WIV L L ++ + K++LG+CFGHQ+L R GGK GR+ +G D+G+ I
Sbjct: 76 DDDWIVKLCSLCQKLDDMKKKVLGICFGHQILSRIKGGKVGRASRGLDMGLRSITMVTDA 135
Query: 161 ARL--FSPIKLPVHMPIIEFHQDEVWELPPQAEVLARSDMTGVEMFRLGDRAMGVQGHPE 218
+ + ++P + II+ HQDEV ELP A +LA SD VEM G+ +G+QGHPE
Sbjct: 136 VKPGGYFGSQIPKSLAIIKCHQDEVLELPESATLLAYSDKYNVEMCSYGNHLLGIQGHPE 195
Query: 219 YSKDILMSIADRLLRNDLILDHQVDKAKASFDLRQPDKDLWKKVCRGFLKGR 270
Y+K+IL I DR++ L+ DKAKA+ + +PD+ W+ +C+ FLKGR
Sbjct: 196 YNKEILFEIIDRVVNLKLMEQDFADKAKATMENAEPDRKQWQTLCKNFLKGR 247
>AT2G23960.1 | chr2:10196059-10197610 FORWARD LENGTH=252
Length = 251
Score = 207 bits (526), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 99/230 (43%), Positives = 148/230 (64%), Gaps = 2/230 (0%)
Query: 41 DSEYVRKAYGGYFEVFRALLAEDGERWRVYRAVRGELPGEEEAAGIDGFVISGSCSDAHA 100
DSE+ +K YGGY VF +LL ++GE+W +R V GE P E++ +GFVISGS DA
Sbjct: 15 DSEFAKKTYGGYHNVFVSLLGDEGEQWDSFRVVDGEFPEEKDLEKYEGFVISGSSHDAFQ 74
Query: 101 DDPWIVALVDLIRRQNAAGKRILGVCFGHQVLCRALGGKTGRSKKGWD--IGVNCIHPTA 158
D WI+ L D+I++ + K++LG+CFGHQ++ RA GGK R++KG + +G I A
Sbjct: 75 DTDWILKLCDIIKKLDDMNKKVLGICFGHQLIARAKGGKVARARKGPELCLGNITIVKEA 134
Query: 159 AMARLFSPIKLPVHMPIIEFHQDEVWELPPQAEVLARSDMTGVEMFRLGDRAMGVQGHPE 218
M + ++P ++ II+ HQDEV ELP A++LA S M VEM+ + D + +QGHPE
Sbjct: 135 VMPENYFGEEVPANLRIIKCHQDEVLELPENAKLLAYSSMYEVEMYSIKDNFLCIQGHPE 194
Query: 219 YSKDILMSIADRLLRNDLILDHQVDKAKASFDLRQPDKDLWKKVCRGFLK 268
Y++DIL I DR+L I + + +KA+ + + D+ W+K+C+ FLK
Sbjct: 195 YNRDILFDIIDRVLAGGHIKQNFAETSKATMEKNEADRKFWQKICKNFLK 244
>AT4G30530.1 | chr4:14920605-14922286 FORWARD LENGTH=251
Length = 250
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 141/233 (60%), Gaps = 2/233 (0%)
Query: 41 DSEYVRKAYGGYFEVFRALLAEDGERWRVYRAVRGELPGEEEAAGIDGFVISGSCSDAHA 100
DSE+V+K YGGY VF ++GE W +R V GE P E++ DGFVISGS DA
Sbjct: 15 DSEFVKKTYGGYHNVFVTTFGDEGEHWDSFRVVSGEFPDEKDLEKYDGFVISGSSHDAFE 74
Query: 101 DDPWIVALVDLIRRQNAAGKRILGVCFGHQVLCRALGGKTGRSKKG--WDIGVNCIHPTA 158
+D WI+ L D++++ + K+ILG+CFGHQ++ R GG GR+KKG +G I A
Sbjct: 75 NDDWILKLCDIVKKIDEMKKKILGICFGHQIIARVRGGTVGRAKKGPELKLGDITIVKDA 134
Query: 159 AMARLFSPIKLPVHMPIIEFHQDEVWELPPQAEVLARSDMTGVEMFRLGDRAMGVQGHPE 218
+ ++P + II+ HQDEV LP A+VLA S VEM+ + D +QGHPE
Sbjct: 135 ITPGSYFGNEIPDSIAIIKCHQDEVLVLPETAKVLAYSKNYEVEMYSIEDHLFCIQGHPE 194
Query: 219 YSKDILMSIADRLLRNDLILDHQVDKAKASFDLRQPDKDLWKKVCRGFLKGRL 271
Y+K+IL I DR+L + D AKA+ + R D+ LW+ +C+ FLKGR+
Sbjct: 195 YNKEILFEIVDRVLALGYVKQEFADAAKATMENRGADRKLWETICKNFLKGRV 247
>AT4G30540.1 | chr4:14923327-14925075 FORWARD LENGTH=249
Length = 248
Score = 194 bits (494), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 142/235 (60%)
Query: 36 LQCGEDSEYVRKAYGGYFEVFRALLAEDGERWRVYRAVRGELPGEEEAAGIDGFVISGSC 95
Q DSE+V++ YGGYF VF + ++GE+W ++R + GE P +E+ +GFVISGS
Sbjct: 11 FQATPDSEFVKEMYGGYFNVFVSAFGDEGEQWDLFRVIDGEFPRDEDLEKYEGFVISGSL 70
Query: 96 SDAHADDPWIVALVDLIRRQNAAGKRILGVCFGHQVLCRALGGKTGRSKKGWDIGVNCIH 155
DA ++ WI+ L + ++ + K+ILG+CFGHQ++CR GGK GR++KG DIG+ I
Sbjct: 71 HDAFTEEDWIIELCSVCKKLDVMKKKILGICFGHQIICRVRGGKVGRARKGPDIGLGNIT 130
Query: 156 PTAAMARLFSPIKLPVHMPIIEFHQDEVWELPPQAEVLARSDMTGVEMFRLGDRAMGVQG 215
+ + + II+ H+DEV E P A V+ SD VE+F + D + QG
Sbjct: 131 IVQDVIKPGDYFDQIESLSIIQCHRDEVLEPPESARVIGFSDKCDVEIFSVEDHLLCFQG 190
Query: 216 HPEYSKDILMSIADRLLRNDLILDHQVDKAKASFDLRQPDKDLWKKVCRGFLKGR 270
HPEY+K+IL+ I DR+ + + + ++KAK S +PD +C+ FLKGR
Sbjct: 191 HPEYNKEILLEIIDRVHKIKFVEEEILEKAKDSIKKFEPDTQRLHMLCKNFLKGR 245
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.141 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,687,120
Number of extensions: 230654
Number of successful extensions: 476
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 5
Length of query: 293
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 195
Effective length of database: 8,419,801
Effective search space: 1641861195
Effective search space used: 1641861195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)