Os02g0179200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glutamine amidotransferase class-I domain containing protein.
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Os02g0179200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glutamine amidotransferase class-I domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 241.24 | 0.73 | 3.4 | -0.681 | 0.314 | 2.33 | -0.532 | -3.37 | 0.308 | 21.6 | 24.3 | 270 | 13.2 | 5.3 |
| 253.76 | 0.742 | 3.39 | -0.39 | 0.418 | 2.13 | -1.35 | -- | 0.365 | 20.4 | 24.37 | 259 | 13.2 | 5.29 |
| 242.13 | 0.725 | 3.4 | -0.669 | 0.34 | 2.3 | -- | -3.56 | 0.31 | 21 | 24.36 | 269 | 13.2 | 5.32 |
| 259.39 | 0.75 | 3.38 | -0.393 | 0.374 | 2.1 | -- | -- | 0.367 | 20.6 | 24.2 | 255 | 13.3 | 5.47 |
| 245.34 | 0.73 | 3.39 | -0.741 | -- | 2.3 | -- | -3.42 | 0.26 | -- | 24 | 255 | 13.2 | 6.12 |
| 349.93 | 0.877 | 3.37 | -0.23 | 1.72 | -- | -1.08 | -- | 0.55 | 18.7 | -- | -- | -- | -- |
| 352.86 | 0.88 | 3.37 | -0.212 | 1.71 | -- | -- | -- | 0.547 | 18.7 | -- | -- | -- | -- |
| 261.95 | 0.754 | 3.38 | -0.405 | -- | 2.18 | -- | -- | 0.323 | -- | 24 | 233 | 13.3 | 6.15 |
| 263.18 | 0.756 | 3.37 | -- | 0.392 | 2.03 | -- | -- | 0.412 | 20.4 | 24.22 | 249 | 13.3 | 5.6 |
| 506.28 | 1.05 | 3.34 | -0.252 | -- | -- | -- | -- | 0.513 | -- | -- | -- | -- | -- |
| 354.05 | 0.88 | 3.37 | -- | 1.72 | -- | -- | -- | 0.571 | 18.7 | -- | -- | -- | -- |
| 265.67 | 0.759 | 3.37 | -- | -- | 2.14 | -- | -- | 0.365 | -- | 24.05 | 222 | 13.4 | 6.25 |
| 507.96 | 1.05 | 3.33 | -- | -- | -- | -- | -- | 0.541 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 248.67 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 5 |
| 2 | 251.35 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 14 |
| 3 | 251.46 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 8 |
| 5 | 251.95 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 7 |
| 6 | 251.96 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 12 |
| 11 | 253.92 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 11 |
| 18 | 256.07 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 19 |
| 26 | 257.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 6 |
| 33 | 258.67 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 9 |
| 69 | 263.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 11 |
| 78 | 264.25 | temperature | 20 | 270 | > th | dose dependent | sin | 18 | NA |
| 102 | 266.20 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 18 |
| 125 | 268.30 | radiation | 1 | 270 | < th | dose dependent | sin | 16 | NA |
| 138 | 268.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 4 |
| 166 | 271.02 | humidity | 80 | 270 | < th | dose independent | rect. | 13 | 5 |
| 171 | 271.20 | radiation | 1 | 270 | > th | dose independent | rect. | 13 | 6 |
| 229 | 273.07 | radiation | 1 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 236 | 273.44 | humidity | 80 | 270 | < th | dose independent | rect. | 13 | 8 |
| 271 | 274.74 | radiation | 1 | 270 | < th | dose independent | sin | 15 | NA |
| 277 | 274.87 | radiation | 1 | 270 | > th | dose independent | sin | 15 | NA |
| 280 | 274.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 13 |
| 305 | 275.67 | temperature | 30 | 270 | < th | dose dependent | sin | 19 | NA |
| 362 | 277.90 | wind | 7 | 270 | < th | dose independent | rect. | 17 | 21 |
| 407 | 279.24 | humidity | 80 | 90 | < th | dose independent | rect. | 15 | 6 |
| 419 | 279.57 | radiation | 1 | 90 | > th | dose independent | rect. | 16 | 13 |
| 473 | 280.47 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 12 |
| 522 | 281.49 | humidity | 80 | 90 | < th | dose independent | rect. | 15 | 8 |
| 563 | 282.23 | radiation | 1 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 578 | 282.47 | humidity | 80 | 10 | < th | dose independent | rect. | 16 | 4 |
| 598 | 282.96 | humidity | 90 | 10 | < th | dose dependent | rect. | 16 | 6 |
| 599 | 282.97 | temperature | 25 | 10 | > th | dose independent | rect. | 15 | 5 |
| 602 | 283.04 | wind | 7 | 270 | < th | dose independent | rect. | 9 | 14 |
| 604 | 283.04 | radiation | 1 | 4320 | < th | dose dependent | rect. | 20 | 10 |
| 605 | 283.06 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 12 |
| 611 | 283.13 | radiation | 1 | 4320 | < th | dose dependent | rect. | 23 | 7 |
| 647 | 283.76 | wind | 7 | 270 | < th | dose independent | rect. | 18 | 19 |
| 757 | 285.53 | radiation | 1 | 270 | > th | dose independent | rect. | 11 | 22 |
| 797 | 286.09 | wind | 1 | 270 | > th | dose dependent | rect. | 13 | 5 |
| 799 | 286.09 | radiation | 1 | 270 | < th | dose dependent | rect. | 13 | 15 |
| 814 | 286.32 | radiation | 1 | 270 | < th | dose dependent | rect. | 10 | 18 |
| 830 | 286.56 | radiation | 1 | 270 | < th | dose dependent | rect. | 10 | 15 |
| 891 | 287.15 | radiation | 1 | 270 | < th | dose independent | rect. | 3 | 23 |
| 990 | 288.51 | humidity | 80 | 270 | > th | dose independent | rect. | 10 | 13 |
| 1000 | 288.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 12 |