Os09g0424200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glutamine amidotransferase class-I domain containing protein.
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Os09g0424200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glutamine amidotransferase class-I domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 646.21 | 1.19 | 7.88 | -3.17 | 2.69 | 4.29 | -1.87 | -8.35 | -2.05 | 5.08 | 27 | 5766 | -- | -- |
| 688.02 | 1.22 | 7.68 | -0.753 | 2.58 | 3.71 | -2.12 | -- | -1.84 | 5.14 | 26.7 | 7153 | -- | -- |
| 655.02 | 1.19 | 7.88 | -3.19 | 2.68 | 4.27 | -- | -8.43 | -2.05 | 5.05 | 27 | 5765 | -- | -- |
| 696.99 | 1.23 | 7.63 | -0.706 | 2.63 | 3.53 | -- | -- | -1.75 | 5.11 | 26.8 | 7194 | -- | -- |
| 1019.25 | 1.49 | 7.9 | -3.14 | -- | 4.43 | -- | -8.21 | -1.98 | -- | 26.9 | 5638 | -- | -- |
| 1143.81 | 1.59 | 7.38 | 0.832 | 2.78 | -- | -1.46 | -- | -0.641 | 4.97 | -- | -- | -- | -- |
| 1149.22 | 1.59 | 7.38 | 0.835 | 2.77 | -- | -- | -- | -0.634 | 4.94 | -- | -- | -- | -- |
| 1043.62 | 1.5 | 7.67 | -0.591 | -- | 3.55 | -- | -- | -1.7 | -- | 27.1 | 7045 | -- | -- |
| 708.44 | 1.24 | 7.61 | -- | 2.63 | 3.3 | -- | -- | -1.62 | 5.11 | 26.8 | 7202 | -- | -- |
| 1553.92 | 1.84 | 7.41 | 0.936 | -- | -- | -- | -- | -0.563 | -- | -- | -- | -- | -- |
| 1167.59 | 1.6 | 7.4 | -- | 2.79 | -- | -- | -- | -0.727 | 4.93 | -- | -- | -- | -- |
| 1053.16 | 1.51 | 7.64 | -- | -- | 3.39 | -- | -- | -1.59 | -- | 27.12 | 7036 | -- | -- |
| 1577.05 | 1.85 | 7.43 | -- | -- | -- | -- | -- | -0.666 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 614.90 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 3 | 615.90 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 5 | 616.02 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 7 | 616.47 | humidity | 90 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 10 | 616.65 | humidity | 90 | 43200 | > th | dose independent | rect. | 15 | 16 |
| 19 | 617.07 | humidity | 90 | 43200 | > th | dose independent | sin | 14 | NA |
| 32 | 618.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 49 | 619.56 | humidity | 90 | 43200 | > th | dose independent | rect. | 15 | 12 |
| 61 | 620.53 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 75 | 621.39 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 95 | 622.92 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 96 | 623.09 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 13 |
| 110 | 623.74 | humidity | 90 | 43200 | < th | dose independent | sin | 14 | NA |
| 125 | 624.77 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 18 |
| 143 | 625.62 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 19 |
| 160 | 626.18 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 285 | 632.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 289 | 632.43 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 294 | 632.64 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 300 | 632.85 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 331 | 633.82 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 372 | 635.68 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 382 | 635.68 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 4 |
| 395 | 636.02 | humidity | 90 | 43200 | > th | dose dependent | sin | 13 | NA |
| 413 | 636.54 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 467 | 638.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 478 | 638.51 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 8 |
| 492 | 638.77 | humidity | 90 | 43200 | < th | dose independent | sin | 7 | NA |
| 493 | 638.77 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 525 | 639.71 | humidity | 90 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 533 | 640.02 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 539 | 640.15 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 594 | 641.90 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 18 |
| 663 | 644.02 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 6 |
| 676 | 644.39 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 4 |
| 724 | 645.61 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 732 | 645.85 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 749 | 646.39 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 760 | 646.86 | humidity | 80 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 775 | 647.47 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 856 | 650.45 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 857 | 650.55 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 873 | 651.04 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 877 | 651.17 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 897 | 652.03 | radiation | 1 | 14400 | < th | dose dependent | rect. | 1 | 4 |