BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0424200 Os09g0424200|AK107431
(272 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G30550.1 | chr4:14925618-14926713 FORWARD LENGTH=250 221 2e-58
AT2G23970.1 | chr2:10199698-10201081 FORWARD LENGTH=252 215 2e-56
AT2G23960.1 | chr2:10196059-10197610 FORWARD LENGTH=252 208 2e-54
AT4G30530.1 | chr4:14920605-14922286 FORWARD LENGTH=251 203 1e-52
AT4G30540.1 | chr4:14923327-14925075 FORWARD LENGTH=249 197 4e-51
>AT4G30550.1 | chr4:14925618-14926713 FORWARD LENGTH=250
Length = 249
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 148/243 (60%), Gaps = 12/243 (4%)
Query: 26 DSDYVRKVYGGYLEVFIRAFXXXXXXXXXXXEEWDMFRAVDGELPGADEVDGYDGFVISG 85
DS++V+K YGGY VF+ F E+WD+FR +DG+ P +++D YDGFVISG
Sbjct: 18 DSEFVKKTYGGYFNVFVSTFGEEG-------EQWDLFRVIDGQFPDENDLDKYDGFVISG 70
Query: 86 SPHDAYADDLWILRLCLLVRDLVAMRKRLLGICFGHQVICRALGGRVGKARGGWDIGIRE 145
SPHDA+ D WI++LC + + L M+K++LGICFGHQ+I R GG++G+A G D+G+R
Sbjct: 71 SPHDAFGDADWIVKLCEVCQKLDHMKKKVLGICFGHQIITRVKGGKIGRALKGADMGLRS 130
Query: 146 VAMAESLPPYRFLDDALQGITAAAAPYAKITEVHQDEVWELPAGAEVLASSSKTGVEMFC 205
+ +A+ R G A A I + HQDEV ELP A +LASS VEMF
Sbjct: 131 ITIAKDNEKLR----GYFGDVEVPASLA-IIKCHQDEVLELPESATLLASSEVCNVEMFS 185
Query: 206 AGDRVLGIQGHPEYTADILLNLVDRLSSAGSITMAVAEGVRRQLEDTGPDREFWIKLCKS 265
GD IQGHPEY +IL +VDR+ + + A+ + +E PDR W KLCK+
Sbjct: 186 IGDHFFCIQGHPEYNKEILFEIVDRVLNMKLMEQEFADKAKSTMETAQPDRILWQKLCKN 245
Query: 266 FLK 268
FLK
Sbjct: 246 FLK 248
>AT2G23970.1 | chr2:10199698-10201081 FORWARD LENGTH=252
Length = 251
Score = 215 bits (547), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 152/249 (61%), Gaps = 17/249 (6%)
Query: 26 DSDYVRKVYGGYLEVFIRAFXXXXXXXXXXXEEWDMFRAVDGELPGADEVDGYDGFVISG 85
DS +V+K YGGY VF+ F E+WD+FR +DGE P ++D YDGFVISG
Sbjct: 16 DSTFVKKAYGGYFNVFVSTFGEDG-------EQWDLFRVIDGEFPDDKDLDKYDGFVISG 68
Query: 86 SPHDAYADDLWILRLCLLVRDLVAMRKRLLGICFGHQVICRALGGRVGKARGGWDIGIRE 145
S +DA+ DD WI++LC L + L M+K++LGICFGHQ++ R GG+VG+A G D+G+R
Sbjct: 69 SLNDAFGDDDWIVKLCSLCQKLDDMKKKVLGICFGHQILSRIKGGKVGRASRGLDMGLRS 128
Query: 146 VAM-AESLPPYRFLDDALQGITAAAAPYA-KITEVHQDEVWELPAGAEVLASSSKTGVEM 203
+ M +++ P G + P + I + HQDEV ELP A +LA S K VEM
Sbjct: 129 ITMVTDAVKP--------GGYFGSQIPKSLAIIKCHQDEVLELPESATLLAYSDKYNVEM 180
Query: 204 FCAGDRVLGIQGHPEYTADILLNLVDRLSSAGSITMAVAEGVRRQLEDTGPDREFWIKLC 263
G+ +LGIQGHPEY +IL ++DR+ + + A+ + +E+ PDR+ W LC
Sbjct: 181 CSYGNHLLGIQGHPEYNKEILFEIIDRVVNLKLMEQDFADKAKATMENAEPDRKQWQTLC 240
Query: 264 KSFLKTEEE 272
K+FLK E
Sbjct: 241 KNFLKGRSE 249
>AT2G23960.1 | chr2:10196059-10197610 FORWARD LENGTH=252
Length = 251
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 149/246 (60%), Gaps = 15/246 (6%)
Query: 26 DSDYVRKVYGGYLEVFIRAFXXXXXXXXXXXEEWDMFRAVDGELPGADEVDGYDGFVISG 85
DS++ +K YGGY VF+ E+WD FR VDGE P +++ Y+GFVISG
Sbjct: 15 DSEFAKKTYGGYHNVFVSLLGDEG-------EQWDSFRVVDGEFPEEKDLEKYEGFVISG 67
Query: 86 SPHDAYADDLWILRLCLLVRDLVAMRKRLLGICFGHQVICRALGGRVGKARGGWDIGIRE 145
S HDA+ D WIL+LC +++ L M K++LGICFGHQ+I RA GG+V +AR G ++ +
Sbjct: 68 SSHDAFQDTDWILKLCDIIKKLDDMNKKVLGICFGHQLIARAKGGKVARARKGPELCLGN 127
Query: 146 VAMA-ESLPPYRFLDDALQGITAAAAPYAKITEVHQDEVWELPAGAEVLASSSKTGVEMF 204
+ + E++ P + + + +I + HQDEV ELP A++LA SS VEM+
Sbjct: 128 ITIVKEAVMPENYFGEEVPA-------NLRIIKCHQDEVLELPENAKLLAYSSMYEVEMY 180
Query: 205 CAGDRVLGIQGHPEYTADILLNLVDRLSSAGSITMAVAEGVRRQLEDTGPDREFWIKLCK 264
D L IQGHPEY DIL +++DR+ + G I AE + +E DR+FW K+CK
Sbjct: 181 SIKDNFLCIQGHPEYNRDILFDIIDRVLAGGHIKQNFAETSKATMEKNEADRKFWQKICK 240
Query: 265 SFLKTE 270
+FLK +
Sbjct: 241 NFLKRQ 246
>AT4G30530.1 | chr4:14920605-14922286 FORWARD LENGTH=251
Length = 250
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 147/244 (60%), Gaps = 15/244 (6%)
Query: 26 DSDYVRKVYGGYLEVFIRAFXXXXXXXXXXXEEWDMFRAVDGELPGADEVDGYDGFVISG 85
DS++V+K YGGY VF+ F E WD FR V GE P +++ YDGFVISG
Sbjct: 15 DSEFVKKTYGGYHNVFVTTFGDEG-------EHWDSFRVVSGEFPDEKDLEKYDGFVISG 67
Query: 86 SPHDAYADDLWILRLCLLVRDLVAMRKRLLGICFGHQVICRALGGRVGKARGGWDIGIRE 145
S HDA+ +D WIL+LC +V+ + M+K++LGICFGHQ+I R GG VG+A+ G ++ + +
Sbjct: 68 SSHDAFENDDWILKLCDIVKKIDEMKKKILGICFGHQIIARVRGGTVGRAKKGPELKLGD 127
Query: 146 VAMA-ESLPPYRFLDDALQGITAAAAPYAKITEVHQDEVWELPAGAEVLASSSKTGVEMF 204
+ + +++ P + + + A I + HQDEV LP A+VLA S VEM+
Sbjct: 128 ITIVKDAITPGSYFGNEIPDSIA-------IIKCHQDEVLVLPETAKVLAYSKNYEVEMY 180
Query: 205 CAGDRVLGIQGHPEYTADILLNLVDRLSSAGSITMAVAEGVRRQLEDTGPDREFWIKLCK 264
D + IQGHPEY +IL +VDR+ + G + A+ + +E+ G DR+ W +CK
Sbjct: 181 SIEDHLFCIQGHPEYNKEILFEIVDRVLALGYVKQEFADAAKATMENRGADRKLWETICK 240
Query: 265 SFLK 268
+FLK
Sbjct: 241 NFLK 244
>AT4G30540.1 | chr4:14923327-14925075 FORWARD LENGTH=249
Length = 248
Score = 197 bits (502), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 149/244 (61%), Gaps = 17/244 (6%)
Query: 26 DSDYVRKVYGGYLEVFIRAFXXXXXXXXXXXEEWDMFRAVDGELPGADEVDGYDGFVISG 85
DS++V+++YGGY VF+ AF E+WD+FR +DGE P ++++ Y+GFVISG
Sbjct: 16 DSEFVKEMYGGYFNVFVSAFGDEG-------EQWDLFRVIDGEFPRDEDLEKYEGFVISG 68
Query: 86 SPHDAYADDLWILRLCLLVRDLVAMRKRLLGICFGHQVICRALGGRVGKARGGWDIGIRE 145
S HDA+ ++ WI+ LC + + L M+K++LGICFGHQ+ICR GG+VG+AR G DIG+
Sbjct: 69 SLHDAFTEEDWIIELCSVCKKLDVMKKKILGICFGHQIICRVRGGKVGRARKGPDIGLGN 128
Query: 146 VAMAES-LPPYRFLDDALQGITAAAAPYAKITEVHQDEVWELPAGAEVLASSSKTGVEMF 204
+ + + + P + D ++ ++ I + H+DEV E P A V+ S K VE+F
Sbjct: 129 ITIVQDVIKPGDYF-DQIESLS--------IIQCHRDEVLEPPESARVIGFSDKCDVEIF 179
Query: 205 CAGDRVLGIQGHPEYTADILLNLVDRLSSAGSITMAVAEGVRRQLEDTGPDREFWIKLCK 264
D +L QGHPEY +ILL ++DR+ + + E + ++ PD + LCK
Sbjct: 180 SVEDHLLCFQGHPEYNKEILLEIIDRVHKIKFVEEEILEKAKDSIKKFEPDTQRLHMLCK 239
Query: 265 SFLK 268
+FLK
Sbjct: 240 NFLK 243
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.141 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,394,940
Number of extensions: 207767
Number of successful extensions: 388
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 5
Length of query: 272
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 175
Effective length of database: 8,447,217
Effective search space: 1478262975
Effective search space used: 1478262975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)