BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0168700 Os02g0168700|AK061562
         (213 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0168700  Peptidylprolyl isomerase, FKBP-type domain con...   325   1e-89
Os04g0446500  Similar to FK506-binding protein 2 precursor (...    66   2e-11
Os02g0199300  Peptidylprolyl isomerase, FKBP-type domain con...    64   8e-11

>Os02g0168700 Peptidylprolyl isomerase, FKBP-type domain containing protein
          Length = 213

 Score =  325 bits (833), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 167/213 (78%), Positives = 167/213 (78%)

Query: 1   MVSLSXXXXXXXXXXXXXXXXXXFAVAEAHAPTIPRRHXXXXXXXXXXXXXXXXXXXXXX 60
           MVSLS                  FAVAEAHAPTIPRRH                      
Sbjct: 1   MVSLSAAVAPAAGVVPPPQKAQAFAVAEAHAPTIPRRHLLLASAASTLPAAAAAASASAA 60

Query: 61  XXXXXXEIPGSGGVKALDLREGPGEVPADGDQVAIHYYGRLAAKQGWRFDSTYDHKDETG 120
                 EIPGSGGVKALDLREGPGEVPADGDQVAIHYYGRLAAKQGWRFDSTYDHKDETG
Sbjct: 61  AAPSFAEIPGSGGVKALDLREGPGEVPADGDQVAIHYYGRLAAKQGWRFDSTYDHKDETG 120

Query: 121 DPMPFVFTVGAGNVIPGIEAAVKSMRVGGLRRVIIPPSQGYQNTSQEPIPPNFFDRQRLF 180
           DPMPFVFTVGAGNVIPGIEAAVKSMRVGGLRRVIIPPSQGYQNTSQEPIPPNFFDRQRLF
Sbjct: 121 DPMPFVFTVGAGNVIPGIEAAVKSMRVGGLRRVIIPPSQGYQNTSQEPIPPNFFDRQRLF 180

Query: 181 TTIFNPTRLANGEGSTLGTLIFDIELISIRQHS 213
           TTIFNPTRLANGEGSTLGTLIFDIELISIRQHS
Sbjct: 181 TTIFNPTRLANGEGSTLGTLIFDIELISIRQHS 213



>Os04g0446500 Similar to FK506-binding protein 2 precursor (EC 5.2.1.8)
           (Peptidyl-prolyl cis- trans isomerase) (PPIase)
           (Rotamase) (FKBP-13) (FKBP-15)
          Length = 525

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 34/137 (24%)

Query: 74  VKALDLREGPGEVPADGDQVAIHYYGRLAAKQGWRFDSTYDHKDETGDPMPFVFTVGAGN 133
           ++ +++ +  G+  + G +V++ Y G+L  K G  FDST   +        F F +G G 
Sbjct: 423 IEEIEMGKPDGKKASPGKKVSVKYIGKL--KNGTIFDSTVGRR-------AFDFRLGIGE 473

Query: 134 VIPGIEAAVKSMRVGGLRRVIIPPSQGYQNTSQEPIPPNFFDRQRLFTTIFNPTRLANGE 193
           VI G +  +  MRVG  RR+ IPPS GY N    PIP N                     
Sbjct: 474 VIKGWDIGINGMRVGDKRRLTIPPSMGYGNKRMGPIPQN--------------------- 512

Query: 194 GSTLGTLIFDIELISIR 210
                TL+FD+EL++++
Sbjct: 513 ----STLVFDVELVNVK 525



>Os02g0199300 Peptidylprolyl isomerase, FKBP-type domain containing protein
          Length = 211

 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 17/137 (12%)

Query: 73  GVKALDLREGPGEVPADGDQVAIHYYGRLAAKQGWRFDSTYDHKDETGDPMPFVFTVGAG 132
           GVK  D+ +G G    +GD V  +Y  R A   G+   ST D    +G+  P    +   
Sbjct: 91  GVKLEDVVDGEGPEAREGDVVQFNYVCRRA--NGYFVHSTVDQF--SGESKPVTLALDGK 146

Query: 133 NVIPGIEAAVKSMRVGGLRRVIIPPSQGYQNTSQEPIPPNFFDRQRLFTTIFNPTRLANG 192
            +I G++  +  M+ GG RR +IPP  GY + S +PIP  F  R+ L +    P      
Sbjct: 147 EMIRGLKDVIVGMKTGGKRRALIPPQVGYTDESLQPIPEEFGPRRSLLSHAKEP------ 200

Query: 193 EGSTLGTLIFDIELISI 209
                  L+F+++L+ +
Sbjct: 201 -------LVFEVQLLKV 210



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,563,554
Number of extensions: 275168
Number of successful extensions: 505
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 511
Number of HSP's successfully gapped: 3
Length of query: 213
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 116
Effective length of database: 11,971,043
Effective search space: 1388640988
Effective search space used: 1388640988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)