Os02g0199300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.
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Os02g0199300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 155.58 | 0.586 | 7.99 | -2.64 | 2.49 | 1.63 | 0.893 | 2.23 | -0.879 | 2.83 | 21.28 | 504 | -- | -- |
| 160.01 | 0.589 | 8.01 | -2.89 | 2.52 | 1.77 | 1.15 | -- | -0.921 | 2.82 | 22.36 | 483 | -- | -- |
| 157.96 | 0.585 | 7.98 | -2.65 | 2.44 | 1.59 | -- | 2.25 | -0.861 | 2.86 | 21.62 | 563 | -- | -- |
| 159.56 | 0.588 | 8.04 | -3.11 | 2.45 | 1.78 | -- | -- | -0.997 | 2.91 | 22.2 | 560 | -- | -- |
| 361.93 | 0.886 | 7.98 | -2.76 | -- | 1.99 | -- | 1.95 | -0.837 | -- | 23.8 | 1077 | -- | -- |
| 220.08 | 0.695 | 7.99 | -2.69 | 2.19 | -- | 0.415 | -- | -0.701 | 1.84 | -- | -- | -- | -- |
| 220.75 | 0.696 | 7.99 | -2.7 | 2.19 | -- | -- | -- | -0.704 | 1.85 | -- | -- | -- | -- |
| 360.91 | 0.885 | 8.04 | -3.25 | -- | 2.15 | -- | -- | -0.98 | -- | 23.87 | 1080 | -- | -- |
| 394.65 | 0.925 | 7.91 | -- | 2.32 | 0.935 | -- | -- | -0.408 | 2.44 | 26.5 | 537 | -- | -- |
| 509.89 | 1.06 | 7.97 | -2.61 | -- | -- | -- | -- | -0.654 | -- | -- | -- | -- | -- |
| 412.71 | 0.95 | 7.92 | -- | 2.14 | -- | -- | -- | -0.403 | 1.81 | -- | -- | -- | -- |
| 620.19 | 1.16 | 7.93 | -- | -- | 1.43 | -- | -- | -0.504 | -- | 24.3 | 1065 | -- | -- |
| 689.44 | 1.23 | 7.9 | -- | -- | -- | -- | -- | -0.364 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 146.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 9 | 148.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 19 |
| 10 | 148.41 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 17 |
| 11 | 148.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 17 |
| 64 | 153.59 | temperature | 20 | 10 | > th | dose dependent | sin | 15 | NA |
| 101 | 155.53 | temperature | 30 | 10 | < th | dose dependent | sin | 15 | NA |
| 136 | 157.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 145 | 157.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 13 |
| 154 | 157.89 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 155 | 157.89 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 13 | 19 |
| 163 | 158.16 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 176 | 158.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 187 | 158.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 22 |
| 193 | 158.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 213 | 159.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 219 | 159.16 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 229 | 159.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 17 |
| 271 | 159.78 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 272 | 159.81 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 12 |
| 316 | 160.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 9 |
| 322 | 160.28 | temperature | 20 | 1440 | > th | dose dependent | sin | 5 | NA |
| 361 | 160.50 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 436 | 160.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 14 |
| 444 | 160.77 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 4 |
| 472 | 160.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 11 |
| 475 | 160.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 9 |
| 565 | 161.18 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 4 |
| 571 | 161.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 17 |
| 612 | 161.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 628 | 161.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 10 |
| 656 | 161.62 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 684 | 161.77 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 705 | 161.86 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 8 | 16 |
| 714 | 161.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 13 |
| 721 | 161.92 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 722 | 161.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 10 |
| 730 | 161.95 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 791 | 162.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 16 |
| 794 | 162.27 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 18 |
| 929 | 162.64 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 954 | 162.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 23 |