BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0199300 Os02g0199300|AK064726
         (211 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0199300  Peptidylprolyl isomerase, FKBP-type domain con...   352   1e-97
Os02g0168700  Peptidylprolyl isomerase, FKBP-type domain con...    64   7e-11

>Os02g0199300 Peptidylprolyl isomerase, FKBP-type domain containing protein
          Length = 211

 Score =  352 bits (903), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 180/211 (85%), Positives = 180/211 (85%)

Query: 1   MAPASLTRLTNPLXXXXXXXXXXXXXXXXXXXXXXXXXVVSRRRAVSEMAILGGXXXXXX 60
           MAPASLTRLTNPL                         VVSRRRAVSEMAILGG      
Sbjct: 1   MAPASLTRLTNPLPCASPSPRCRRRPGRSPPARAAACGVVSRRRAVSEMAILGGAAAAAA 60

Query: 61  SCCVDLFFAHMPARAATLEPDVIRYRKLDSGVKLEDVVDGEGPEAREGDVVQFNYVCRRA 120
           SCCVDLFFAHMPARAATLEPDVIRYRKLDSGVKLEDVVDGEGPEAREGDVVQFNYVCRRA
Sbjct: 61  SCCVDLFFAHMPARAATLEPDVIRYRKLDSGVKLEDVVDGEGPEAREGDVVQFNYVCRRA 120

Query: 121 NGYFVHSTVDQFSGESKPVTLALDGKEMIRGLKDVIVGMKTGGKRRALIPPQVGYTDESL 180
           NGYFVHSTVDQFSGESKPVTLALDGKEMIRGLKDVIVGMKTGGKRRALIPPQVGYTDESL
Sbjct: 121 NGYFVHSTVDQFSGESKPVTLALDGKEMIRGLKDVIVGMKTGGKRRALIPPQVGYTDESL 180

Query: 181 QPIPEEFGPRRSLLSHAKEPLVFEVQLLKVL 211
           QPIPEEFGPRRSLLSHAKEPLVFEVQLLKVL
Sbjct: 181 QPIPEEFGPRRSLLSHAKEPLVFEVQLLKVL 211



>Os02g0168700 Peptidylprolyl isomerase, FKBP-type domain containing protein
          Length = 213

 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 17/137 (12%)

Query: 91  GVKLEDVVDGEGPEAREGDVVQFNYVCRRA--NGYFVHSTVDQF--SGESKPVTLALDGK 146
           GVK  D+ +G G    +GD V  +Y  R A   G+   ST D    +G+  P    +   
Sbjct: 73  GVKALDLREGPGEVPADGDQVAIHYYGRLAAKQGWRFDSTYDHKDETGDPMPFVFTVGAG 132

Query: 147 EMIRGLKDVIVGMKTGGKRRALIPPQVGYTDESLQPIPEEFGPRRSLLSHAKEP------ 200
            +I G++  +  M+ GG RR +IPP  GY + S +PIP  F  R+ L +    P      
Sbjct: 133 NVIPGIEAAVKSMRVGGLRRVIIPPSQGYQNTSQEPIPPNFFDRQRLFTTIFNPTRLANG 192

Query: 201 -------LVFEVQLLKV 210
                  L+F+++L+ +
Sbjct: 193 EGSTLGTLIFDIELISI 209



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,241,486
Number of extensions: 258198
Number of successful extensions: 587
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 592
Number of HSP's successfully gapped: 2
Length of query: 211
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 115
Effective length of database: 12,023,257
Effective search space: 1382674555
Effective search space used: 1382674555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)