Os02g0168700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.
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Os02g0168700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.48 | 0.291 | 9.16 | -0.0764 | 0.377 | 0.854 | 0.286 | -0.431 | -0.332 | 10.8 | 24.54 | 291 | -- | -- |
| 38.54 | 0.289 | 9.17 | -0.123 | 0.405 | 0.938 | 0.316 | -- | -0.36 | 10.7 | 23.69 | 223 | -- | -- |
| 38.74 | 0.29 | 9.16 | -0.0766 | 0.391 | 0.902 | -- | -0.363 | -0.345 | 10.8 | 23.78 | 263 | -- | -- |
| 38.9 | 0.29 | 9.17 | -0.123 | 0.402 | 0.97 | -- | -- | -0.363 | 10.8 | 23.45 | 244 | -- | -- |
| 43.61 | 0.308 | 9.16 | -0.00408 | -- | 0.917 | -- | -0.453 | -0.283 | -- | 26.71 | 701 | -- | -- |
| 50.17 | 0.332 | 9.2 | -0.37 | 0.369 | -- | 0.347 | -- | -0.511 | 9.84 | -- | -- | -- | -- |
| 50.63 | 0.333 | 9.2 | -0.356 | 0.367 | -- | -- | -- | -0.51 | 9.87 | -- | -- | -- | -- |
| 43.83 | 0.308 | 9.16 | -0.0932 | -- | 0.941 | -- | -- | -0.301 | -- | 26.58 | 709 | -- | -- |
| 39.27 | 0.292 | 9.16 | -- | 0.401 | 1.03 | -- | -- | -0.342 | 10.9 | 23.45 | 253 | -- | -- |
| 58.7 | 0.358 | 9.21 | -0.36 | -- | -- | -- | -- | -0.51 | -- | -- | -- | -- | -- |
| 53.98 | 0.344 | 9.19 | -- | 0.368 | -- | -- | -- | -0.471 | 9.94 | -- | -- | -- | -- |
| 44.03 | 0.309 | 9.16 | -- | -- | 0.978 | -- | -- | -0.284 | -- | 26.58 | 714 | -- | -- |
| 62.13 | 0.368 | 9.2 | -- | -- | -- | -- | -- | -0.47 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.31 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 2 | 38.32 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 22 |
| 3 | 38.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 12 | 38.43 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 25 | 38.49 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 26 | 38.49 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 27 | 38.50 | wind | 5 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 33 | 38.51 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 48 | 38.55 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 60 | 38.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 11 |
| 62 | 38.57 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 102 | 38.63 | humidity | 70 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 115 | 38.64 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 19 |
| 129 | 38.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 138 | 38.68 | wind | 5 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 147 | 38.70 | temperature | 25 | 1440 | < th | dose dependent | sin | 8 | NA |
| 207 | 38.77 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 237 | 38.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 241 | 38.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 452 | 39.03 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 515 | 39.09 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 571 | 39.15 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 585 | 39.16 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 588 | 39.17 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 598 | 39.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 22 |
| 635 | 39.20 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 22 |
| 648 | 39.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 22 |
| 655 | 39.21 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 702 | 39.24 | humidity | 60 | 43200 | < th | dose independent | sin | 8 | NA |
| 710 | 39.25 | humidity | 60 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 762 | 39.29 | wind | 5 | 14400 | > th | dose independent | sin | 0 | NA |
| 764 | 39.29 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 803 | 39.31 | humidity | 60 | 43200 | < th | dose dependent | rect. | 15 | 21 |
| 826 | 39.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 841 | 39.35 | wind | 5 | 14400 | < th | dose independent | sin | 0 | NA |
| 842 | 39.35 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 10 |
| 845 | 39.35 | humidity | 70 | 43200 | < th | dose dependent | sin | 8 | NA |
| 908 | 39.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 943 | 39.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 949 | 39.42 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 973 | 39.44 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 10 |
| 991 | 39.45 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 14 |