BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0165000 Os02g0165000|AK069562
(487 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0165000 RINGv domain containing protein 825 0.0
Os06g0677300 RINGv domain containing protein 540 e-154
Os04g0105100 RINGv domain containing protein 250 1e-66
Os06g0340200 RINGv domain containing protein 232 5e-61
>Os02g0165000 RINGv domain containing protein
Length = 487
Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/487 (85%), Positives = 415/487 (85%)
Query: 1 MDSPGGXXXXXXXXESSNRAGEDAKSDGVSCQNSRRPNLSLQIPNRAFDDTLPTSTRIKI 60
MDSPGG ESSNRAGEDAKSDGVSCQNSRRPNLSLQIPNRAFDDTLPTSTRIKI
Sbjct: 1 MDSPGGAAAAAAAAESSNRAGEDAKSDGVSCQNSRRPNLSLQIPNRAFDDTLPTSTRIKI 60
Query: 61 SPSPNSARSGLPPRPNSTRTKSSIRGIIPQRSFKAKSSLQDGDQTILLIPDTPSSSGQQV 120
SPSPNSARSGLPPRPNSTRTKSSIRGIIPQRSFKAKSSLQDGDQTILLIPDTPSSSGQQV
Sbjct: 61 SPSPNSARSGLPPRPNSTRTKSSIRGIIPQRSFKAKSSLQDGDQTILLIPDTPSSSGQQV 120
Query: 121 KATTSRSFSFTKVINSLSAKRTHSLPVTPVAASGPSSHEGHADNLPSTVKNEVETQIRRS 180
KATTSRSFSFTKVINSLSAKRTHSLPVTPVAASGPSSHEGHADNLPSTVKNEVETQIRRS
Sbjct: 121 KATTSRSFSFTKVINSLSAKRTHSLPVTPVAASGPSSHEGHADNLPSTVKNEVETQIRRS 180
Query: 181 LSAPGNHDSKDLRRTASSGLXXXXXXXXXXXXXXXXASNDGIEEAVXXXXXXXXXXXXXX 240
LSAPGNHDSKDLRRTASSGL ASNDGIEEAV
Sbjct: 181 LSAPGNHDSKDLRRTASSGLIRVIPTTPRPVPVETVASNDGIEEAVDAPEDGGEDIPEED 240
Query: 241 XVCRICLVELNEGGETLKLECSCKGELALAHQECAIKWFSIKGNKTCDVCRQEVQNLPVT 300
VCRICLVELNEGGETLKLECSCKGELALAHQECAIKWFSIKGNKTCDVCRQEVQNLPVT
Sbjct: 241 AVCRICLVELNEGGETLKLECSCKGELALAHQECAIKWFSIKGNKTCDVCRQEVQNLPVT 300
Query: 301 LLRIQIRTVNRQPRNGVQQRAAHPHRFWKETPVLVMVSTLAYFCFLEQLLVADMKSRALA 360
LLRIQIRTVNRQPRNGVQQRAAHPHRFWKETPVLVMVSTLAYFCFLEQLLVADMKSRALA
Sbjct: 301 LLRIQIRTVNRQPRNGVQQRAAHPHRFWKETPVLVMVSTLAYFCFLEQLLVADMKSRALA 360
Query: 361 ISLPFSCLLGIFSSILASTMATDNYLWAFATFQFAFLILFAHIFYNLLKMGAVLAILLAS 420
ISLPFSCLLGIFSSILASTMATDNYLWAFATFQFAFLILFAHIFYNLLKMGAVLAILLAS
Sbjct: 361 ISLPFSCLLGIFSSILASTMATDNYLWAFATFQFAFLILFAHIFYNLLKMGAVLAILLAS 420
Query: 421 FTGFGIAISLNAMLIEYXXXXXXXXXXXXXXXXXXXGQXXXXXXXXXXXXXXRQQGSGSD 480
FTGFGIAISLNAMLIEY GQ RQQGSGSD
Sbjct: 421 FTGFGIAISLNAMLIEYLRWRLLRNQRLTQRRNHRHGQSGNNASNENTASNARQQGSGSD 480
Query: 481 QQSAEHG 487
QQSAEHG
Sbjct: 481 QQSAEHG 487
>Os06g0677300 RINGv domain containing protein
Length = 483
Score = 540 bits (1391), Expect = e-154, Method: Compositional matrix adjust.
Identities = 266/418 (63%), Positives = 316/418 (75%), Gaps = 2/418 (0%)
Query: 21 GEDAKSDGVSCQNSRRPNLSLQIPNRAFDDTLPTSTRIKISPSPNSARSGLPPRPNSTRT 80
+D S NSRRPNLSLQIP R D+ + TS RI ISPSP+S R+GLPPRPNSTRT
Sbjct: 19 AQDDSVQTASGHNSRRPNLSLQIPARTLDNQIGTSARINISPSPSSTRAGLPPRPNSTRT 78
Query: 81 KSSIRGIIPQRSFKAKSSLQDGDQTILLIPDTPSSSGQQVKATTSRSFSFTKVINSLSAK 140
KSS++ IIPQ+SF+A+SS Q+GD+ ILL+P TPS GQQ +T RSFSF KVINSLSAK
Sbjct: 79 KSSLKSIIPQQSFRARSSAQEGDRAILLVPGTPSE-GQQDNTSTLRSFSFRKVINSLSAK 137
Query: 141 RTHSLPVTPVAASGP-SSHEGHADNLPSTVKNEVETQIRRSLSAPGNHDSKDLRRTASSG 199
RTHSLPVTP+A S SS +NLP+T +V+ +IRRSLS PGN ++ LRR S G
Sbjct: 138 RTHSLPVTPIATSDKTSSPANQINNLPTTDDQDVQARIRRSLSVPGNRKNRSLRRADSLG 197
Query: 200 LXXXXXXXXXXXXXXXXASNDGIEEAVXXXXXXXXXXXXXXXVCRICLVELNEGGETLKL 259
+ AS+DGIEE V VCRICLVELNEGGETLK+
Sbjct: 198 VIRVIPTTPRPIPVNTTASSDGIEETVDVPGDGGKDIPEEEAVCRICLVELNEGGETLKM 257
Query: 260 ECSCKGELALAHQECAIKWFSIKGNKTCDVCRQEVQNLPVTLLRIQIRTVNRQPRNGVQQ 319
ECSCKGELALAHQ+CA+KWFSIKGNK CDVC+QEVQNLPVTLLRI +T NR+ NG Q
Sbjct: 258 ECSCKGELALAHQDCAVKWFSIKGNKICDVCKQEVQNLPVTLLRIPTQTANRRVTNGAHQ 317
Query: 320 RAAHPHRFWKETPVLVMVSTLAYFCFLEQLLVADMKSRALAISLPFSCLLGIFSSILAST 379
RA+ +RFW++ P+LVMVS LAYFCFLEQLLV D+ S ALAISLPFSC+LG+ SS++AST
Sbjct: 318 RASQQYRFWQDIPILVMVSMLAYFCFLEQLLVTDLLSHALAISLPFSCVLGLLSSMIAST 377
Query: 380 MATDNYLWAFATFQFAFLILFAHIFYNLLKMGAVLAILLASFTGFGIAISLNAMLIEY 437
M T +YLWA+A+FQFA +ILFAHIFYN+LK+ VLA+LL+SFTGFGIAIS N+ML+EY
Sbjct: 378 MVTKSYLWAYASFQFAIVILFAHIFYNVLKVNPVLAVLLSSFTGFGIAISANSMLVEY 435
>Os04g0105100 RINGv domain containing protein
Length = 459
Score = 250 bits (639), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 157/420 (37%), Positives = 229/420 (54%), Gaps = 51/420 (12%)
Query: 33 NSRRPNLSLQIPNRAFDDTLPTSTRIKISPSPNSARSGLPPRPNSTRTKSSIRGIIPQRS 92
+ P+LS+ IP A +SP+P A + + P P T + S + P S
Sbjct: 24 SDHHPHLSIDIPPAA----------ASMSPAPTQAAADITPTP--TTSILSTKASTPAGS 71
Query: 93 FKAKSSLQDGDQTILLIPDTPSSSGQQVKATTSRSF---SFTKVINSLSAK--RTHSLPV 147
++S+ + P SS ++ T SF + +A+ RT SLPV
Sbjct: 72 CSSRSTS--------VAPKPQRSSSFMLRQTVKSLLPVGSFKSSVKFFNARISRTSSLPV 123
Query: 148 TPVAASGPSSHEGHADNLPSTVKNEVETQIRRSLSAPGN----HDSKDLRRTASSGLXXX 203
T V+ + AD +T + + RS S P N ++ K +R S G
Sbjct: 124 TDVS-------QEQADKTSTTHAVDKAGHMYRSQSLPMNMKKLNNGKSFKRMNSLG---G 173
Query: 204 XXXXXXXXXXXXXASNDGIEEAVXXX--XXXXXXXXXXXXVCRICLVELNEGGETLKLEC 261
S++ I + V VCRIC+VEL+EG +TLKLEC
Sbjct: 174 VYRVVPSTPSVPVTSSNVIPDIVPSEPGDEDGEDIAEEEAVCRICMVELSEGSDTLKLEC 233
Query: 262 SCKGELALAHQECAIKWFSIKGNKTCDVCRQEVQNLPVTLLRIQIRTVNRQPRNGVQQRA 321
SCKGELALAH+ CA+KWF++KG +TC+VC+++VQNLPVTL+R+Q +QP +Q
Sbjct: 234 SCKGELALAHKHCAMKWFTMKGTRTCEVCKEDVQNLPVTLVRVQSM---QQPE--LQTNP 288
Query: 322 AHPHRF-----WKETPVLVMVSTLAYFCFLEQLLVADMKSRALAISLPFSCLLGIFSSIL 376
A+ R+ W+ P+LV+VS LAYFCFLEQLLVA ALAISLPFSC+LG+FSS+
Sbjct: 289 ANASRYDRLRMWQGAPILVIVSILAYFCFLEQLLVARDGIAALAISLPFSCILGLFSSLT 348
Query: 377 ASTMATDNYLWAFATFQFAFLILFAHIFYNLLKMGAVLAILLASFTGFGIAISLNAMLIE 436
++M Y+W +AT QF F++ F H+FY L + AV++I+LA+F GFG+ ++ N++++E
Sbjct: 349 TTSMVARRYVWIYATIQFLFVVFFTHLFYRYLHLQAVISIILATFAGFGVGMTGNSIIVE 408
>Os06g0340200 RINGv domain containing protein
Length = 497
Score = 232 bits (591), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 109/218 (50%), Positives = 145/218 (66%), Gaps = 23/218 (10%)
Query: 242 VCRICLVELNEGGE------TLKLECSCKGELALAHQECAIKWFSIKGNKTCDVCRQEVQ 295
VCRIC+V L+E G TLKLEC CKGELALAH +CA+KWFSIKGN TCDVC EV
Sbjct: 244 VCRICMVALSEDGASGGGGGTLKLECRCKGELALAHGDCAVKWFSIKGNATCDVCNHEVL 303
Query: 296 NLPVTLLRIQIR----------------TVNRQPRNGVQQRAAHPH-RFWKETPVLVMVS 338
NLPVTL R+ R G +R + + R W+ T +LV+VS
Sbjct: 304 NLPVTLRRVHDRQQLVYEAAAAAAAAAAAAAGDDIAGGNRRGGYSYGRVWRGTTILVIVS 363
Query: 339 TLAYFCFLEQLLVADMKSRALAISLPFSCLLGIFSSILASTMATDNYLWAFATFQFAFLI 398
LAYFCFLEQLLV D + ALAISLPF+C+LG+FSS+ + M + Y+W ++ Q+ F++
Sbjct: 364 MLAYFCFLEQLLVGDHGTAALAISLPFACVLGLFSSLTTAKMVSRKYVWIYSAVQYLFIV 423
Query: 399 LFAHIFYNLLKMGAVLAILLASFTGFGIAISLNAMLIE 436
LF H+FY +++ AV+AI+L++F GFG+AI NA+L++
Sbjct: 424 LFTHLFYRYVRLQAVIAIILSTFAGFGVAICANAILLQ 461
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,768,725
Number of extensions: 535694
Number of successful extensions: 2183
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2175
Number of HSP's successfully gapped: 4
Length of query: 487
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 382
Effective length of database: 11,553,331
Effective search space: 4413372442
Effective search space used: 4413372442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)