Os02g0165000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RINGv domain containing protein.
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Os02g0165000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RINGv domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.76 | 0.224 | 10.1 | 0.0575 | 0.627 | -2.23 | 0.0538 | -4.38 | 0.384 | 2.72 | 19.56 | 6083 | -- | -- |
| 24.81 | 0.232 | 10.2 | 0.121 | 0.61 | -0.453 | 0.0976 | -- | 0.319 | 2.86 | 27.71 | 3274 | -- | -- |
| 22.72 | 0.222 | 10.1 | 0.0464 | 0.633 | -2.33 | -- | -4.54 | 0.38 | 2.71 | 19.4 | 6213 | -- | -- |
| 24.7 | 0.231 | 10.2 | 0.134 | 0.622 | -0.404 | -- | -- | 0.354 | 2.76 | 26.87 | 3275 | -- | -- |
| 45.05 | 0.313 | 10.1 | 0.00783 | -- | -2.26 | -- | -4.28 | 0.371 | -- | 19.86 | 6757 | -- | -- |
| 27.41 | 0.245 | 10.2 | 0.313 | 0.632 | -- | 0.0748 | -- | 0.456 | 2.72 | -- | -- | -- | -- |
| 27.43 | 0.245 | 10.2 | 0.311 | 0.632 | -- | -- | -- | 0.455 | 2.71 | -- | -- | -- | -- |
| 45.08 | 0.313 | 10.2 | 0.12 | -- | -0.526 | -- | -- | 0.335 | -- | 28.3 | 2575 | -- | -- |
| 25.06 | 0.233 | 10.2 | -- | 0.621 | -0.48 | -- | -- | 0.325 | 2.8 | 26.35 | 3352 | -- | -- |
| 50.69 | 0.333 | 10.2 | 0.338 | -- | -- | -- | -- | 0.471 | -- | -- | -- | -- | -- |
| 29.99 | 0.256 | 10.2 | -- | 0.638 | -- | -- | -- | 0.42 | 2.71 | -- | -- | -- | -- |
| 45.38 | 0.314 | 10.2 | -- | -- | -0.578 | -- | -- | 0.305 | -- | 27.9 | 2578 | -- | -- |
| 53.7 | 0.342 | 10.2 | -- | -- | -- | -- | -- | 0.434 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.03 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 2 | 22.08 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 5 | 22.13 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 9 | 22.21 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 19 | 22.42 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 32 | 22.61 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 9 |
| 41 | 22.66 | wind | 5 | 4320 | > th | dose independent | rect. | 23 | 3 |
| 44 | 22.67 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 8 |
| 48 | 22.71 | wind | 5 | 4320 | < th | dose independent | rect. | 23 | 3 |
| 68 | 22.78 | wind | 5 | 4320 | > th | dose dependent | rect. | 23 | 3 |
| 74 | 22.80 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 75 | 22.80 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 79 | 22.81 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 10 |
| 83 | 22.82 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 8 |
| 91 | 22.83 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 106 | 22.87 | wind | 1 | 14400 | < th | dose dependent | sin | 4 | NA |
| 109 | 22.88 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 124 | 22.90 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 125 | 22.90 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 128 | 22.90 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 169 | 22.92 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 217 | 22.97 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 248 | 22.98 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 250 | 22.99 | humidity | 50 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 268 | 22.99 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 17 |
| 279 | 23.00 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 292 | 23.01 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 6 | 7 |
| 363 | 23.04 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 2 | NA |
| 365 | 23.04 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 380 | 23.05 | radiation | 1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 381 | 23.05 | radiation | 1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 406 | 23.06 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 14 | NA |
| 438 | 23.07 | wind | 1 | 14400 | < th | dose independent | sin | 3 | NA |
| 478 | 23.08 | humidity | 50 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 520 | 23.09 | wind | 1 | 14400 | > th | dose independent | sin | 2 | NA |
| 623 | 23.11 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 13 | NA |
| 632 | 23.11 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 13 | 11 |
| 662 | 23.11 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 18 |
| 718 | 23.12 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 15 |
| 722 | 23.12 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 6 | 18 |
| 727 | 23.12 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 764 | 23.13 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 906 | 23.14 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 21 |
| 914 | 23.15 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |
| 942 | 23.15 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 944 | 23.15 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 20 |