Os06g0340200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RINGv domain containing protein.
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Os06g0340200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RINGv domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.3 | 0.576 | 7.6 | 0.697 | 0.842 | -1.07 | 0.481 | 0.376 | 0.217 | 2.21 | 20.6 | 759 | -- | -- |
| 150.69 | 0.572 | 7.6 | 0.65 | 0.851 | -1.11 | 0.553 | -- | 0.207 | 2.19 | 20.5 | 792 | -- | -- |
| 151.05 | 0.572 | 7.6 | 0.718 | 0.854 | -1.08 | -- | 0.492 | 0.224 | 2.17 | 20.59 | 793 | -- | -- |
| 151.74 | 0.574 | 7.61 | 0.622 | 0.854 | -1.13 | -- | -- | 0.204 | 2.14 | 20.55 | 792 | -- | -- |
| 183.62 | 0.631 | 7.61 | 0.64 | -- | -1.05 | -- | 0.198 | 0.208 | -- | 20.6 | 410 | -- | -- |
| 186.03 | 0.639 | 7.66 | 0.22 | 0.772 | -- | 0.792 | -- | -0.0437 | 2.92 | -- | -- | -- | -- |
| 188.13 | 0.642 | 7.66 | 0.202 | 0.774 | -- | -- | -- | -0.0482 | 2.83 | -- | -- | -- | -- |
| 183.74 | 0.631 | 7.61 | 0.582 | -- | -1.08 | -- | -- | 0.198 | -- | 20.58 | 392 | -- | -- |
| 160.25 | 0.59 | 7.63 | -- | 0.788 | -0.933 | -- | -- | 0.0968 | 2.21 | 20.55 | 605 | -- | -- |
| 222.77 | 0.697 | 7.66 | 0.235 | -- | -- | -- | -- | -0.0284 | -- | -- | -- | -- | -- |
| 189.21 | 0.643 | 7.67 | -- | 0.778 | -- | -- | -- | -0.0708 | 2.83 | -- | -- | -- | -- |
| 191.9 | 0.645 | 7.63 | -- | -- | -0.942 | -- | -- | 0.108 | -- | 20.51 | 365 | -- | -- |
| 224.23 | 0.699 | 7.66 | -- | -- | -- | -- | -- | -0.0545 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 145.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 2 |
| 2 | 145.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 3 | 146.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 6 | 146.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 22 | 147.42 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 24 | 147.44 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 17 |
| 30 | 147.67 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 33 | 147.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 36 | 147.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 48 | 148.07 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 19 |
| 168 | 149.85 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 281 | 151.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 293 | 151.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 353 | 151.52 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 20 |
| 455 | 152.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 477 | 152.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 496 | 152.34 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 504 | 152.42 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 535 | 152.61 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 541 | 152.65 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 593 | 153.00 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 619 | 153.20 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 23 |
| 671 | 153.58 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 772 | 154.40 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 949 | 155.67 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 985 | 156.00 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |