BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0340200 Os06g0340200|AK121342
(497 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G60580.2 | chr5:24354298-24356706 FORWARD LENGTH=495 232 3e-61
AT5G03180.2 | chr5:754201-756411 REVERSE LENGTH=467 213 2e-55
AT3G09760.1 | chr3:2992975-2995451 REVERSE LENGTH=492 212 4e-55
AT3G06330.1 | chr3:1917334-1919709 FORWARD LENGTH=427 161 8e-40
AT5G18760.1 | chr5:6258508-6260828 REVERSE LENGTH=412 135 7e-32
AT5G05830.1 | chr5:1755910-1756825 FORWARD LENGTH=205 57 3e-08
AT5G59000.1 | chr5:23818768-23820018 FORWARD LENGTH=232 56 5e-08
AT2G37950.1 | chr2:15882536-15883665 REVERSE LENGTH=208 55 1e-07
AT2G34200.1 | chr2:14441105-14441882 FORWARD LENGTH=223 51 2e-06
AT5G63780.1 | chr5:25525160-25526446 FORWARD LENGTH=368 50 3e-06
AT5G01070.2 | chr5:25094-25799 REVERSE LENGTH=207 49 5e-06
>AT5G60580.2 | chr5:24354298-24356706 FORWARD LENGTH=495
Length = 494
Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 151/228 (66%), Gaps = 37/228 (16%)
Query: 244 VCRICMVALSEDGASXXXXXTLKLECRCKGELALAHGDCAVKWFSIKGNATCDVCNHEVL 303
VCRIC+V L E G TLK+EC CKGELALAH DCA+KWF+IKGN TC+VC EV
Sbjct: 256 VCRICLVELCEGGE------TLKMECSCKGELALAHKDCALKWFTIKGNKTCEVCKQEVK 309
Query: 304 NLPVTLRRVHD-RQQLVYEXXXXXXXXXXXXXGDDIAXXXXXXXXXXXXVWRGTTILVIV 362
NLPVTL R+ R V + D++ VW+ +LVI+
Sbjct: 310 NLPVTLLRIQSLRNSGVPQL--------------DVSGYR---------VWQEVPVLVII 346
Query: 363 SMLAYFCFLEQLLVGDHGTAALAISLPFACVLGLFSSLTTAKM-------VSRKYVWIYS 415
SMLAYFCFLEQLLV + GT A+AISLPF+C+LGL +S+T + M V R++VWIY+
Sbjct: 347 SMLAYFCFLEQLLVENMGTGAIAISLPFSCILGLLASMTASTMVLEYSYAVMRRFVWIYA 406
Query: 416 AVQYLFIVLFTHLFYRYVRLQAVIAIILSTFAGFGVAICANAILLQII 463
+VQ+ +VLF H+FY V+LQ V++++LSTFAGFGV IC ++++++ +
Sbjct: 407 SVQFALVVLFAHIFYSVVKLQPVLSVLLSTFAGFGVCICGSSVMVEFV 454
>AT5G03180.2 | chr5:754201-756411 REVERSE LENGTH=467
Length = 466
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 132/213 (61%), Gaps = 28/213 (13%)
Query: 244 VCRICMVALSEDGASXXXXXTLKLECRCKGELALAHGDCAVKWFSIKGNATCDVCNHEVL 303
VCRICMV + ED + K+EC CKGELALAH C +KWF+IKGN TCDVC EV
Sbjct: 250 VCRICMVEMEEDEEA------FKMECMCKGELALAHKTCTIKWFTIKGNITCDVCKQEVR 303
Query: 304 NLPVTLRRVHDRQQLVYEXXXXXXXXXXXXXGDDIAXXXXXXXXXXXXVWRGTTILVIVS 363
NLPVTL RV D Q DI VW+ ILVIVS
Sbjct: 304 NLPVTLLRVQDSQN-------------RSRAARDIEISRFNN------VWQDIPILVIVS 344
Query: 364 MLAYFCFLEQLLVGDHGTAALAISLPFACVLGLFSSLTTAKMVSRKYVWIYSAVQYLFIV 423
MLAYFCFLEQLL+ D ++A+AI+LPF+C++GL +S+ + MV + YVWIY+ VQ+ F+V
Sbjct: 345 MLAYFCFLEQLLIIDMKSSAVAIALPFSCIIGLLASMISTTMVKKNYVWIYATVQFGFVV 404
Query: 424 LFTHLFYRYVRL---QAVIAIILSTFAGFGVAI 453
LF LFYR VR Q V+ I+L+T GFG+ +
Sbjct: 405 LFAQLFYRVVRFDVKQPVMCIVLATMIGFGLTM 437
>AT3G09760.1 | chr3:2992975-2995451 REVERSE LENGTH=492
Length = 491
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 135/219 (61%), Gaps = 27/219 (12%)
Query: 244 VCRICMVALSEDGASXXXXXTLKLECRCKGELALAHGDCAVKWFSIKGNATCDVCNHEVL 303
VCRIC+V L ED + K+EC C+GELALAH +C +KWF+IKGN TCDVC EV
Sbjct: 265 VCRICLVELGEDSEA------FKMECLCRGELALAHKECTIKWFTIKGNRTCDVCKQEVQ 318
Query: 304 NLPVTLRRVHDRQQLVYEXXXXXXXXXXXXXGDDIAXXXXXXXXXXXXVWRGTTILVIVS 363
NLPVTL R+ + + + +W+ ILVIVS
Sbjct: 319 NLPVTLLRMQNSRGSI---------------------GAPDAEAAHYSLWQDVPILVIVS 357
Query: 364 MLAYFCFLEQLLVGDHGTAALAISLPFACVLGLFSSLTTAKMVSRKYVWIYSAVQYLFIV 423
MLAYFCFLEQLL+ + A+A+SLPF+CVLGLF+S+T MV ++YVWIY+ Q+ +V
Sbjct: 358 MLAYFCFLEQLLLTKMQSGAIAVSLPFSCVLGLFASMTATTMVPKRYVWIYATTQFGLVV 417
Query: 424 LFTHLFYRYVRLQAVIAIILSTFAGFGVAICANAILLQI 462
F+H+F+ VR+Q V+AI+L+T GFG+ + +++
Sbjct: 418 FFSHIFFTLVRMQPVVAILLATIVGFGLTMSGTTGIVEF 456
>AT3G06330.1 | chr3:1917334-1919709 FORWARD LENGTH=427
Length = 426
Score = 161 bits (407), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 117/217 (53%), Gaps = 23/217 (10%)
Query: 244 VCRICMVALSEDGASXXXXXTLKLECRCKGELALAHGDCAVKWFSIKGNATCDVCNHEVL 303
VCRIC+ + E+G TLK+EC CKG+L L H CA+KWFS KG TCDVC V
Sbjct: 217 VCRICL-DVCEEG------NTLKMECSCKGDLRLVHEACAMKWFSTKGTRTCDVCRQVVQ 269
Query: 304 NLPVTLRRVHDRQQLVYEXXXXXXXXXXXXXGDDIAXXXXXXXXXXXXVWRGTTILVIVS 363
NLPVTL RV Q + W+ +LV++S
Sbjct: 270 NLPVTLVRVPTPNQ----------------QNNRRGSSQQNMPSQTVSAWQEFVVLVLIS 313
Query: 364 MLAYFCFLEQLLVGDHGTAALAISLPFACVLGLFSSLTTAKMVSRKYVWIYSAVQYLFIV 423
+ YF FLEQLL+ D A+ I+ PF+ LGL +S+ + R+Y+W Y+A+++ +
Sbjct: 314 TVCYFFFLEQLLIRDLNKQAIYIAAPFSLTLGLLASIFAIVLAIREYIWTYAALEFALVG 373
Query: 424 LFTHLFYRYVRLQAVIAIILSTFAGFGVAICANAILL 460
+ H+FY VRL A +I+ + GFG+A+C N++ L
Sbjct: 374 MLVHIFYATVRLSATYSILFAGILGFGIAVCLNSLYL 410
>AT5G18760.1 | chr5:6258508-6260828 REVERSE LENGTH=412
Length = 411
Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 112/217 (51%), Gaps = 27/217 (12%)
Query: 244 VCRICMVALSEDGASXXXXXTLKLECRCKGELALAHGDCAVKWFSIKGNATCDVCNHEVL 303
VCRIC+ + E+G TLK+EC CKG+L L H CA+KWFS KG CDVC EV
Sbjct: 202 VCRICL-DVCEEG------NTLKMECSCKGDLRLVHEHCAIKWFSTKGTRICDVCRQEVR 254
Query: 304 NLPVTLRRVHDRQQLV--YEXXXXXXXXXXXXXGDDIAXXXXXXXXXXXXVWRGTTILVI 361
NLPV L RV QL E G + +LV+
Sbjct: 255 NLPVILLRVPTINQLTNRRELTQQSSEPQSISVGQEFV------------------VLVL 296
Query: 362 VSMLAYFCFLEQLLVGDHGTAALAISLPFACVLGLFSSLTTAKMVSRKYVWIYSAVQYLF 421
+S + YF FLE LL+ D + A+ ++ PF+ L L +S + R+Y+W Y+A+++
Sbjct: 297 ISTVCYFFFLEHLLIRDLNSQAIFVAAPFSFTLALLASTFAVILAIREYIWTYAALEFAL 356
Query: 422 IVLFTHLFYRYVRLQAVIAIILSTFAGFGVAICANAI 458
+ L HL Y +R+ + A++ + GFG+A+C N +
Sbjct: 357 VALLVHLLYATLRVPVIYAMLFAGILGFGMAMCLNLL 393
>AT5G05830.1 | chr5:1755910-1756825 FORWARD LENGTH=205
Length = 204
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 245 CRICMVALSEDGASXXXXXTLKLECRCKGELALAHGDCAVKWFSIKGNATCDVC 298
CRIC ++L D A+ ++L C CK +LA AH CA WF IKGN C+VC
Sbjct: 79 CRICHMSL--DAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVC 130
>AT5G59000.1 | chr5:23818768-23820018 FORWARD LENGTH=232
Length = 231
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%)
Query: 265 LKLECRCKGELALAHGDCAVKWFSIKGNATCDVCNHEVLNL 305
L+L C CKG+L +AH CA WF IKGN TC++C LN+
Sbjct: 130 LQLGCSCKGDLGVAHSKCAETWFKIKGNMTCEICGAMALNV 170
>AT2G37950.1 | chr2:15882536-15883665 REVERSE LENGTH=208
Length = 207
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 245 CRICMVALSEDGASXXXXXTLKLECRCKGELALAHGDCAVKWFSIKGNATCDVCNHEVLN 304
CRIC + + G ++L C CK +LA+AH CA WF IKG+ TC++C N
Sbjct: 84 CRICHLGVETSGGG-----AIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSVARN 138
Query: 305 L 305
+
Sbjct: 139 V 139
>AT2G34200.1 | chr2:14441105-14441882 FORWARD LENGTH=223
Length = 222
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 244 VCRICMVALSEDGASXXXXXTLKLE-----CRCKGELALAHGDCAVKWFSIKGNATCDVC 298
+CRIC + + ++ E C+CK EL LAH CA WF ++GN+ C++C
Sbjct: 101 ICRICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKLRGNSVCEIC 160
Query: 299 NHEVLNLPVTL 309
N+ V L
Sbjct: 161 GCTAKNVTVRL 171
>AT5G63780.1 | chr5:25525160-25526446 FORWARD LENGTH=368
Length = 367
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 265 LKLECRCKGELALAHGDCAVKWFSIKGNATCDVCNHEVLNL 305
L+L C CK ELAL H CA+KWF G+ C++C H N+
Sbjct: 135 LELGCSCKNELALVHYACALKWFLNHGSTVCEICGHPAENI 175
>AT5G01070.2 | chr5:25094-25799 REVERSE LENGTH=207
Length = 206
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 245 CRICMVALSEDGASXXXXXTLKLECRCKGELALAHGDCAVKWFSIKGNATCDVC 298
CRIC + L + + + L C CK +L H CA WF IKGN TC++C
Sbjct: 78 CRICHLGL--ESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTCEIC 129
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,149,911
Number of extensions: 205922
Number of successful extensions: 589
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 16
Length of query: 497
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 394
Effective length of database: 8,282,721
Effective search space: 3263392074
Effective search space used: 3263392074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 114 (48.5 bits)