BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0154600 Os02g0154600|AK102276
(369 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0154600 Conserved hypothetical protein 644 0.0
Os03g0215000 Conserved hypothetical protein 644 0.0
Os08g0203900 UAA transporter family protein 303 2e-82
Os09g0314333 UAA transporter family protein 293 1e-79
Os08g0365600 72 8e-13
>Os02g0154600 Conserved hypothetical protein
Length = 369
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/359 (90%), Positives = 324/359 (90%)
Query: 1 MSNLSEPSKEAVSADDSSAVQKTGAWSNTLNILLQQTSVYGVAAGYCLSASLLSIINKWA 60
MSNLSEPSKEAVSADDSSAVQKTGAWSNTLNILLQQTSVYGVAAGYCLSASLLSIINKWA
Sbjct: 1 MSNLSEPSKEAVSADDSSAVQKTGAWSNTLNILLQQTSVYGVAAGYCLSASLLSIINKWA 60
Query: 61 VMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKFLPAAVMFYISIFTNSE 120
VMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKFLPAAVMFYISIFTNSE
Sbjct: 61 VMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKFLPAAVMFYISIFTNSE 120
Query: 121 LLLHANVDTFIVFRSAVPIFVAIGETFYLHQPWPSLKTWLSLSTILGGSVIYVFTDNQFT 180
LLLHANVDTFIVFRSAVPIFVAIGETFYLHQPWPSLKTWLSLSTILGGSVIYVFTDNQFT
Sbjct: 121 LLLHANVDTFIVFRSAVPIFVAIGETFYLHQPWPSLKTWLSLSTILGGSVIYVFTDNQFT 180
Query: 181 VTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEAFMLFPLEMLLTGELNQM 240
VTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEAFMLFPLEMLLTGELNQM
Sbjct: 181 VTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEAFMLFPLEMLLTGELNQM 240
Query: 241 KGDNAKVTNWLSSDVILPVAXXXXXXXXXXXXXXXXRRAISATGFTVLGIVNKLLTVVIN 300
KGDNAKVTNWLSSDVILPVA RRAISATGFTVLGIVNKLLTVVIN
Sbjct: 241 KGDNAKVTNWLSSDVILPVALSCLFGLSISFFGFSCRRAISATGFTVLGIVNKLLTVVIN 300
Query: 301 LLIWDKHASFVGTIGLLICMSGSVLYQQSTTXXXXXXXXXXXXXXXXXXXLLEMQQGHE 359
LLIWDKHASFVGTIGLLICMSGSVLYQQSTT LLEMQQGHE
Sbjct: 301 LLIWDKHASFVGTIGLLICMSGSVLYQQSTTKPKAPKAEPKEENDEEQQKLLEMQQGHE 359
>Os03g0215000 Conserved hypothetical protein
Length = 369
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/369 (88%), Positives = 326/369 (88%)
Query: 1 MSNLSEPSKEAVSADDSSAVQKTGAWSNTLNILLQQTSVYGVAAGYCLSASLLSIINKWA 60
MSNLSEPSKEA SADDSSAVQKTGAWSNTLNILLQQ SVYGVAAGYCLSASLLSIINKWA
Sbjct: 1 MSNLSEPSKEAASADDSSAVQKTGAWSNTLNILLQQASVYGVAAGYCLSASLLSIINKWA 60
Query: 61 VMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKFLPAAVMFYISIFTNSE 120
VMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKFLPAAVMFYISIFTNSE
Sbjct: 61 VMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKFLPAAVMFYISIFTNSE 120
Query: 121 LLLHANVDTFIVFRSAVPIFVAIGETFYLHQPWPSLKTWLSLSTILGGSVIYVFTDNQFT 180
LLLHANVDTFIVFRSAVPIFVAIGET YLHQPWPSLKTWLSLSTILGGSVIYVFTDNQFT
Sbjct: 121 LLLHANVDTFIVFRSAVPIFVAIGETLYLHQPWPSLKTWLSLSTILGGSVIYVFTDNQFT 180
Query: 181 VTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEAFMLFPLEMLLTGELNQM 240
VTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEA MLFPLEMLL GELNQM
Sbjct: 181 VTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEALMLFPLEMLLMGELNQM 240
Query: 241 KGDNAKVTNWLSSDVILPVAXXXXXXXXXXXXXXXXRRAISATGFTVLGIVNKLLTVVIN 300
KGD+AKVTNWLSSDVILPVA RRAISATGFTVLGIVNKLLTVVIN
Sbjct: 241 KGDSAKVTNWLSSDVILPVALSCLFGLSISFFGFSCRRAISATGFTVLGIVNKLLTVVIN 300
Query: 301 LLIWDKHASFVGTIGLLICMSGSVLYQQSTTXXXXXXXXXXXXXXXXXXXLLEMQQGHES 360
LLIWDKHASFVGTIGLLICMSG VLYQQSTT LLEMQQG ES
Sbjct: 301 LLIWDKHASFVGTIGLLICMSGGVLYQQSTTKPKAPKAEPKEENDEEQQKLLEMQQGLES 360
Query: 361 SSTQKQTSS 369
SSTQKQ SS
Sbjct: 361 SSTQKQASS 369
>Os08g0203900 UAA transporter family protein
Length = 342
Score = 303 bits (775), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 155/288 (53%), Positives = 201/288 (69%), Gaps = 1/288 (0%)
Query: 45 GYCLSASLLSIINKWAVMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKF 104
GY L +SLL+IINK+A+ KF YPG LTALQY TSV GV G+L L+ HD NL+T KF
Sbjct: 14 GYALCSSLLAIINKYAITKFSYPGLLTALQYLTSVAGVWTLGKLGLLYHDPFNLQTAKKF 73
Query: 105 LPAAVMFYISIFTNSELLLHANVDTFIVFRSAVPIFVAIGETFYLHQPWPSLKTWLSLST 164
PAA++FY++IFTN+ LL HANVDTFIVFRS P+ VAI +T + QP PS T++SL T
Sbjct: 74 APAALVFYLAIFTNTHLLKHANVDTFIVFRSLTPLLVAIADTAFRKQPCPSKLTFVSLVT 133
Query: 165 ILGGSVIYVFTDNQFTVTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEAF 224
ILGG+V YV TD+ F++TAY+WAVAYL +++ + VYIKH+V +GLNTWG VLYNNL +
Sbjct: 134 ILGGAVGYVMTDSGFSLTAYSWAVAYLVTITTEMVYIKHMVTKLGLNTWGFVLYNNLLSL 193
Query: 225 MLFPLEMLLTGE-LNQMKGDNAKVTNWLSSDVILPVAXXXXXXXXXXXXXXXXRRAISAT 283
++ P+ LTGE L+ + ++ +W D + V+ R+AISAT
Sbjct: 194 IIAPVFWFLTGEHLSVFRAIESRGQSWFELDAFVAVSLSCVFGLLISFFGFAARKAISAT 253
Query: 284 GFTVLGIVNKLLTVVINLLIWDKHASFVGTIGLLICMSGSVLYQQSTT 331
FTV G+VNK LTV IN++IWDKHAS G + LL ++G VLYQQS T
Sbjct: 254 AFTVTGVVNKFLTVAINVMIWDKHASSFGLVCLLFTLAGGVLYQQSVT 301
>Os09g0314333 UAA transporter family protein
Length = 343
Score = 293 bits (751), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/288 (53%), Positives = 191/288 (66%), Gaps = 1/288 (0%)
Query: 45 GYCLSASLLSIINKWAVMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKF 104
GY L +SLL+IINK+AV KF YP LTALQY TS GV + G+L + HD NL KF
Sbjct: 14 GYALCSSLLAIINKYAVTKFGYPALLTALQYLTSAGGVWILGKLGFLCHDPFNLENAKKF 73
Query: 105 LPAAVMFYISIFTNSELLLHANVDTFIVFRSAVPIFVAIGETFYLHQPWPSLKTWLSLST 164
PAA++FY++IFTN+ LL HANVDTFIVFRS P+ VAI +T + QP PS T+LSL
Sbjct: 74 APAAIVFYLAIFTNTNLLYHANVDTFIVFRSLTPLLVAIADTAFRKQPCPSKLTFLSLVV 133
Query: 165 ILGGSVIYVFTDNQFTVTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEAF 224
ILGG+V YV TD+ F++TAY+WA+AYL ++ + VYIKH+V +GLNTWG VLYNNL +
Sbjct: 134 ILGGAVGYVITDSAFSLTAYSWALAYLVIITTEMVYIKHIVTNLGLNTWGFVLYNNLLSL 193
Query: 225 MLFPLEMLLTGELNQM-KGDNAKVTNWLSSDVILPVAXXXXXXXXXXXXXXXXRRAISAT 283
M+ P LTGE + ++ W D + VA R+AISAT
Sbjct: 194 MMAPFFWFLTGEYKSLFTAIESRGERWFQVDAFVAVALSCVFGLLISFFGFATRKAISAT 253
Query: 284 GFTVLGIVNKLLTVVINLLIWDKHASFVGTIGLLICMSGSVLYQQSTT 331
FTV G+VNK LTV IN+LIWDKH+S G I LL ++G VLYQQS T
Sbjct: 254 AFTVTGVVNKFLTVAINVLIWDKHSSPFGLICLLFTIAGGVLYQQSVT 301
>Os08g0365600
Length = 401
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 44/61 (72%)
Query: 59 WAVMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKFLPAAVMFYISIFTN 118
+A+ KF YPG LTALQY TSV GV +L L+ HD N +T KF PAA++FY++IFTN
Sbjct: 18 YAMTKFSYPGLLTALQYLTSVAGVWTLAKLGLLYHDPFNFQTAKKFAPAALVFYLAIFTN 77
Query: 119 S 119
+
Sbjct: 78 T 78
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,924,377
Number of extensions: 337847
Number of successful extensions: 842
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 839
Number of HSP's successfully gapped: 5
Length of query: 369
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 267
Effective length of database: 11,709,973
Effective search space: 3126562791
Effective search space used: 3126562791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)