BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0146700 Os02g0146700|AK105609
(898 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0146700 Similar to PSMD2 subunit (Fragment) 1557 0.0
Os09g0326800 Similar to PSMD2 subunit (Fragment) 1341 0.0
Os06g0699900 Armadillo-like helical domain containing protein 423 e-118
AK110369 185 1e-46
>Os02g0146700 Similar to PSMD2 subunit (Fragment)
Length = 898
Score = 1557 bits (4032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 774/847 (91%), Positives = 774/847 (91%)
Query: 52 QLELYVVRAQDADPGVQKLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKSYFETMP 111
QLELYVVRAQDADPGVQKLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKSYFETMP
Sbjct: 52 QLELYVVRAQDADPGVQKLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKSYFETMP 111
Query: 112 ESSDLKRYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEFQ 171
ESSDLKRYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEFQ
Sbjct: 112 ESSDLKRYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEFQ 171
Query: 172 KRQDDDMPIDALMELVQQIVSFHMKHNAEPXXXXXXXXXXXXXXXXXXXXSTNYKRTCLY 231
KRQDDDMPIDALMELVQQIVSFHMKHNAEP STNYKRTCLY
Sbjct: 172 KRQDDDMPIDALMELVQQIVSFHMKHNAEPEAVDLLMEVEDLDLLVEHVDSTNYKRTCLY 231
Query: 232 LTSSSKYLPAPDDMLALDIAYTIYMKFEDLTSALRIALLLDNKSMQYVKQVYTATEDLQL 291
LTSSSKYLPAPDDMLALDIAYTIYMKFEDLTSALRIALLLDNKSMQYVKQVYTATEDLQL
Sbjct: 232 LTSSSKYLPAPDDMLALDIAYTIYMKFEDLTSALRIALLLDNKSMQYVKQVYTATEDLQL 291
Query: 292 KKQFSFIIARHGLAMEIDDEIAADGNDKEGLQEIVNNSKLSEGYLTLARDIEVMEAKSPE 351
KKQFSFIIARHGLAMEIDDEIAADGNDKEGLQEIVNNSKLSEGYLTLARDIEVMEAKSPE
Sbjct: 292 KKQFSFIIARHGLAMEIDDEIAADGNDKEGLQEIVNNSKLSEGYLTLARDIEVMEAKSPE 351
Query: 352 DIYKVHLIDGRGASSSLDSARQNLAATFVNAFVNAGFGQDKLMTAPXXXXXXXXXXNWLF 411
DIYKVHLIDGRGASSSLDSARQNLAATFVNAFVNAGFGQDKLMTAP NWLF
Sbjct: 352 DIYKVHLIDGRGASSSLDSARQNLAATFVNAFVNAGFGQDKLMTAPSDSSSSGASGNWLF 411
Query: 412 KNKEHGKASAAASLGMILLWDTDSGLAQLDKYLHSNDAHVVAGALLGIGIVTCGVKNDCD 471
KNKEHGKASAAASLGMILLWDTDSGLAQLDKYLHSNDAHVVAGALLGIGIVTCGVKNDCD
Sbjct: 412 KNKEHGKASAAASLGMILLWDTDSGLAQLDKYLHSNDAHVVAGALLGIGIVTCGVKNDCD 471
Query: 472 PALAILMEYINKDDTNXXXXXXXXXXXXXXXSQKEELKSYLSTVLGDSEKSTLEVLIFSA 531
PALAILMEYINKDDTN SQKEELKSYLSTVLGDSEKSTLEVLIFSA
Sbjct: 472 PALAILMEYINKDDTNIRIGAILGLGIAYAGSQKEELKSYLSTVLGDSEKSTLEVLIFSA 531
Query: 532 IALGLVFVGSCNEEIAQSIIFALMERSEAELAEPIIRXXXXXXXXXXXGKQESVEATAEV 591
IALGLVFVGSCNEEIAQSIIFALMERSEAELAEPIIR GKQESVEATAEV
Sbjct: 532 IALGLVFVGSCNEEIAQSIIFALMERSEAELAEPIIRLLPVALGLLYLGKQESVEATAEV 591
Query: 592 SKTFDEKIRKYCDVTLMSLAYAGTGNVLKVQKLLGICSQHLEKGETHQGPAVLGIALIAM 651
SKTFDEKIRKYCDVTLMSLAYAGTGNVLKVQKLLGICSQHLEKGETHQGPAVLGIALIAM
Sbjct: 592 SKTFDEKIRKYCDVTLMSLAYAGTGNVLKVQKLLGICSQHLEKGETHQGPAVLGIALIAM 651
Query: 652 AEELGAEMAVRSLERLLQYGEQNIRRAVPLALGILCISNPKVNVMDTLSRLSHDADADVS 711
AEELGAEMAVRSLERLLQYGEQNIRRAVPLALGILCISNPKVNVMDTLSRLSHDADADVS
Sbjct: 652 AEELGAEMAVRSLERLLQYGEQNIRRAVPLALGILCISNPKVNVMDTLSRLSHDADADVS 711
Query: 712 MAAIISLGFIGAGTNNARIAGMLRNLSSYYYKEAAHLFCVRIAQGLVHLGKGLLTLSPYH 771
MAAIISLGFIGAGTNNARIAGMLRNLSSYYYKEAAHLFCVRIAQGLVHLGKGLLTLSPYH
Sbjct: 712 MAAIISLGFIGAGTNNARIAGMLRNLSSYYYKEAAHLFCVRIAQGLVHLGKGLLTLSPYH 771
Query: 772 SDRFLLSPMALGGLVTVLHACLDMKSTILGKYHYILYIIVLAMQPRMLLTVDEDLKPLSX 831
SDRFLLSPMALGGLVTVLHACLDMKSTILGKYHYILYIIVLAMQPRMLLTVDEDLKPLS
Sbjct: 772 SDRFLLSPMALGGLVTVLHACLDMKSTILGKYHYILYIIVLAMQPRMLLTVDEDLKPLSV 831
Query: 832 XXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGERAELATEKYIPLTSVLEGFVILKK 891
PKTITGFQTHSTPVLLAAGERAELATEKYIPLTSVLEGFVILKK
Sbjct: 832 PVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGERAELATEKYIPLTSVLEGFVILKK 891
Query: 892 NPEYNEE 898
NPEYNEE
Sbjct: 892 NPEYNEE 898
>Os09g0326800 Similar to PSMD2 subunit (Fragment)
Length = 891
Score = 1341 bits (3470), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 674/848 (79%), Positives = 728/848 (85%), Gaps = 4/848 (0%)
Query: 52 QLELYVVRAQDADPGVQKLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKSYFETMP 111
QLELYVVRAQD DPGVQKLALESMRQEIRSATSSMTSVPKPLKFLRPHYG LK+YFETMP
Sbjct: 47 QLELYVVRAQDPDPGVQKLALESMRQEIRSATSSMTSVPKPLKFLRPHYGILKAYFETMP 106
Query: 112 ESSDLKRYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEFQ 171
ES +LK+YMADILSVLALTMSAEGERESLKYR++GSEGDIGSWGHEYVRNLAGEIAQEFQ
Sbjct: 107 ES-ELKKYMADILSVLALTMSAEGERESLKYRMIGSEGDIGSWGHEYVRNLAGEIAQEFQ 165
Query: 172 KRQDDDMPIDALMELVQQIVSFHMKHNAEPXXXXXXXXXXXXXXXXXXXXSTNYKRTCLY 231
KRQDD M D+L ELV+QIVSFHMKHNAEP STNYKRTCLY
Sbjct: 166 KRQDDGMTTDSLKELVEQIVSFHMKHNAEPEAVDLLMEVEKLDLLVKHVDSTNYKRTCLY 225
Query: 232 LTSSSKYLPAPDDMLALDIAYTIYMKFEDLTSALRIALLLDNKSMQYVKQVYTATEDLQL 291
LTSSSKYLPAPDDM AL IA+ IYMKF D +ALRIALLLD+KS++ +KQ++TAT+D L
Sbjct: 226 LTSSSKYLPAPDDMSALKIAFEIYMKFGDFANALRIALLLDDKSLE-LKQIFTATDDFHL 284
Query: 292 KKQFSFIIARHGLAMEIDDEIAADGNDKEGLQEIVNNSKLSEGYLTLARDIEVMEAKSPE 351
KKQF+FIIARHGL+ +IDD+IAAD N+KE LQ+I++N KLSEGYLTLARDIEVME KSPE
Sbjct: 285 KKQFAFIIARHGLSTDIDDDIAADENEKEALQDIISNIKLSEGYLTLARDIEVMEPKSPE 344
Query: 352 DIYKVHLIDGRGA-SSSLDSARQNLAATFVNAFVNAGFGQDKLMTAPXXXXXXXXXXNWL 410
DIYKVHLIDGRGA SSSLDSARQNLAATFVNAFVNAGFGQDKLMTAP NWL
Sbjct: 345 DIYKVHLIDGRGATSSSLDSARQNLAATFVNAFVNAGFGQDKLMTAPSDSSGSGSSGNWL 404
Query: 411 FKNKEHGKASAAASLGMILLWDTDSGLAQLDKYLHSNDAHVVAGALLGIGIVTCGVKNDC 470
FKNKEHGKASAAASLGMILLWD+DSGLAQLDKYLHSND HVVAGALLGIGIV+CGVK+DC
Sbjct: 405 FKNKEHGKASAAASLGMILLWDSDSGLAQLDKYLHSNDIHVVAGALLGIGIVSCGVKSDC 464
Query: 471 DPALAILMEYINKDDTNXXXXXXXXXXXXXXXSQKEELKSYLSTVLGDSEKSTLEVLIFS 530
DPA A++ EY ++D++ SQKEE++ L+ L DS+ LEVL+F+
Sbjct: 465 DPAFALISEYFSRDESIIRIGAILGLGIAYAGSQKEEVRENLTAFLSDSQ-VPLEVLVFA 523
Query: 531 AIALGLVFVGSCNEEIAQSIIFALMERSEAELAEPIIRXXXXXXXXXXXGKQESVEATAE 590
AI+LGLVFVGSCNEEIAQ+II LME SE ELAEPIIR GKQESVEATAE
Sbjct: 524 AISLGLVFVGSCNEEIAQTIICVLMEHSEPELAEPIIRLLPVALGLLYLGKQESVEATAE 583
Query: 591 VSKTFDEKIRKYCDVTLMSLAYAGTGNVLKVQKLLGICSQHLEKGETHQGPAVLGIALIA 650
VSKTFDEKIR YCDVTLMSLAYAGTGNVLKVQKLLGICS+HLEKGETHQGPAVLGI+LI+
Sbjct: 584 VSKTFDEKIRNYCDVTLMSLAYAGTGNVLKVQKLLGICSEHLEKGETHQGPAVLGISLIS 643
Query: 651 MAEELGAEMAVRSLERLLQYGEQNIRRAVPLALGILCISNPKVNVMDTLSRLSHDADADV 710
MAEELGAEMAVRSLERLLQYGEQNIRRAVPLALG+LCISNPKVNVMDT+SRLSHDADA+V
Sbjct: 644 MAEELGAEMAVRSLERLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTMSRLSHDADAEV 703
Query: 711 SMAAIISLGFIGAGTNNARIAGMLRNLSSYYYKEAAHLFCVRIAQGLVHLGKGLLTLSPY 770
SMAAIISLG IGAGTNNARIAGMLRNLSSYYYKEA HLFCVRIAQGLVHLGKGLLTLSPY
Sbjct: 704 SMAAIISLGLIGAGTNNARIAGMLRNLSSYYYKEAGHLFCVRIAQGLVHLGKGLLTLSPY 763
Query: 771 HSDRFLLSPMALGGLVTVLHACLDMKSTILGKYHYILYIIVLAMQPRMLLTVDEDLKPLS 830
HSDRFLLSP+AL GLVTVLHACLDMKS ILGKYHY+LYI+ LAMQPRMLLTVDEDLKPLS
Sbjct: 764 HSDRFLLSPIALAGLVTVLHACLDMKSIILGKYHYMLYILALAMQPRMLLTVDEDLKPLS 823
Query: 831 XXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGERAELATEKYIPLTSVLEGFVILK 890
PKTITGFQTHSTPVLLAAGERAELATEKY+PLT VLEGFVIL+
Sbjct: 824 VPVCVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGERAELATEKYLPLTPVLEGFVILR 883
Query: 891 KNPEYNEE 898
NPEY+E+
Sbjct: 884 NNPEYHED 891
>Os06g0699900 Armadillo-like helical domain containing protein
Length = 238
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/238 (86%), Positives = 215/238 (90%)
Query: 661 VRSLERLLQYGEQNIRRAVPLALGILCISNPKVNVMDTLSRLSHDADADVSMAAIISLGF 720
VRSLERLLQYGEQNIRRAVPLALG+LCISNPKVNVMDT+SRLSHDADA+VSMAAIISLG
Sbjct: 1 VRSLERLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTMSRLSHDADAEVSMAAIISLGL 60
Query: 721 IGAGTNNARIAGMLRNLSSYYYKEAAHLFCVRIAQGLVHLGKGLLTLSPYHSDRFLLSPM 780
IGAGTNNARIAGMLRNLSSYYYKEA HLFCVRIAQGLVHLGKGLLTLSPYHSDRFLLSP+
Sbjct: 61 IGAGTNNARIAGMLRNLSSYYYKEAGHLFCVRIAQGLVHLGKGLLTLSPYHSDRFLLSPI 120
Query: 781 ALGGLVTVLHACLDMKSTILGKYHYILYIIVLAMQPRMLLTVDEDLKPLSXXXXXXXXXX 840
AL GLVTVLHACLDMKS ILGKYHY+LYI+ LAMQPRMLLTVDEDLKPLS
Sbjct: 121 ALAGLVTVLHACLDMKSIILGKYHYMLYILTLAMQPRMLLTVDEDLKPLSVPVRVGQAVD 180
Query: 841 XXXXXXXPKTITGFQTHSTPVLLAAGERAELATEKYIPLTSVLEGFVILKKNPEYNEE 898
PKTITGFQTHSTPVLLAAGERAELATEKY+PLT VLEGFVIL+KNPEY+E+
Sbjct: 181 VVGQAGRPKTITGFQTHSTPVLLAAGERAELATEKYLPLTPVLEGFVILRKNPEYHED 238
>AK110369
Length = 228
Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/156 (57%), Positives = 114/156 (73%)
Query: 743 KEAAHLFCVRIAQGLVHLGKGLLTLSPYHSDRFLLSPMALGGLVTVLHACLDMKSTILGK 802
+E HLF VRIAQGL+HLGKGL+TLSPYHSD L P A GL+ VL + LD K++IL K
Sbjct: 71 QEPNHLFLVRIAQGLLHLGKGLITLSPYHSDNLLFIPSAAAGLLVVLFSGLDFKNSILSK 130
Query: 803 YHYILYIIVLAMQPRMLLTVDEDLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVL 862
H++LY +V A++PRMLLTVDEDLKP+ PKTITGFQTH+TP+L
Sbjct: 131 RHFLLYSLVSAVRPRMLLTVDEDLKPVPVKVKYGTSVDTVGQAGKPKTITGFQTHNTPIL 190
Query: 863 LAAGERAELATEKYIPLTSVLEGFVILKKNPEYNEE 898
L+ GERAE+AT+++IPLTSV+E VI++KNP +E
Sbjct: 191 LSHGERAEIATDEWIPLTSVMEDIVIVRKNPNATKE 226
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,025,877
Number of extensions: 842712
Number of successful extensions: 1926
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1911
Number of HSP's successfully gapped: 4
Length of query: 898
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 788
Effective length of database: 11,292,261
Effective search space: 8898301668
Effective search space used: 8898301668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)