Os09g0326800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PSMD2 subunit (Fragment).
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Os09g0326800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PSMD2 subunit (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.44 | 0.196 | 11.1 | -0.26 | 0.326 | 0.331 | -0.242 | 0.0629 | 0.234 | 16.7 | 91.11 | 1584 | -- | -- |
| 17.38 | 0.194 | 11.1 | -0.254 | 0.343 | 0.329 | -0.227 | -- | 0.241 | 16.8 | 91.17 | 1774 | -- | -- |
| 17.47 | 0.195 | 11.1 | -0.269 | 0.345 | 0.33 | -- | 0.104 | 0.238 | 17 | 91.43 | 1779 | -- | -- |
| 17.49 | 0.195 | 11.1 | -0.257 | 0.343 | 0.332 | -- | -- | 0.239 | 16.9 | 91.45 | 1779 | -- | -- |
| 22.06 | 0.219 | 11.1 | -0.271 | -- | 0.349 | -- | 0.055 | 0.22 | -- | 90.51 | 1308 | -- | -- |
| 19.65 | 0.208 | 11.1 | -0.201 | 0.291 | -- | -0.294 | -- | 0.156 | 16.7 | -- | -- | -- | -- |
| 19.86 | 0.209 | 11.1 | -0.202 | 0.29 | -- | -- | -- | 0.154 | 16.8 | -- | -- | -- | -- |
| 22.06 | 0.219 | 11.1 | -0.257 | -- | 0.351 | -- | -- | 0.221 | -- | 90.48 | 1305 | -- | -- |
| 19.11 | 0.204 | 11.1 | -- | 0.34 | 0.29 | -- | -- | 0.259 | 16.9 | 92.11 | 1777 | -- | -- |
| 24.3 | 0.23 | 11.1 | -0.213 | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
| 20.94 | 0.214 | 11.1 | -- | 0.294 | -- | -- | -- | 0.177 | 16.8 | -- | -- | -- | -- |
| 23.75 | 0.227 | 11.1 | -- | -- | 0.313 | -- | -- | 0.24 | -- | 91.02 | 1308 | -- | -- |
| 25.5 | 0.236 | 11.1 | -- | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.12 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 2 | 16.21 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 3 | 16.22 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 4 | 16.26 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 5 | 16.27 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 29 | 16.38 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 6 |
| 34 | 16.40 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 49 | 16.44 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 77 | 16.51 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 15 |
| 115 | 16.59 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 6 |
| 121 | 16.60 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 123 | 16.61 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 158 | 16.64 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 167 | 16.64 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 168 | 16.64 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 233 | 16.67 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 276 | 16.69 | temperature | 20.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 365 | 16.75 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 390 | 16.76 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 481 | 16.82 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 504 | 16.82 | temperature | 20.0 | 10 | > th | dose dependent | sin | 10 | NA |
| 543 | 16.85 | atmosphere | 1005.0 | 14400 | < th | dose independent | no | NA | NA |
| 549 | 16.85 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 10 | 20 |
| 562 | 16.85 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 569 | 16.85 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 13 | NA |
| 577 | 16.86 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 615 | 16.87 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 622 | 16.87 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 2 | 8 |
| 667 | 16.90 | atmosphere | 1005.0 | 14400 | > th | dose independent | no | NA | NA |
| 668 | 16.90 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 702 | 16.91 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 9 | 22 |
| 710 | 16.91 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 719 | 16.91 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 747 | 16.92 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 802 | 16.95 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 894 | 16.99 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 16 |
| 911 | 17.00 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 918 | 17.00 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 923 | 17.00 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 14 |
| 944 | 17.01 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 949 | 17.01 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 964 | 17.02 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 987 | 17.02 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 3 |