Os06g0699900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os06g0699900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.59 | 0.16 | 12.4 | 0.567 | 0.369 | -0.312 | -0.336 | 0.788 | 0.271 | 19.7 | 5.826 | 365 | -- | -- |
| 11.98 | 0.161 | 12.5 | 0.446 | 0.371 | -0.295 | -0.21 | -- | 0.237 | 19.7 | 13.26 | 364 | -- | -- |
| 11.86 | 0.16 | 12.4 | 0.547 | 0.366 | -0.323 | -- | 0.607 | 0.264 | 19.5 | 13.15 | 300 | -- | -- |
| 12.1 | 0.162 | 12.5 | 0.454 | 0.374 | -0.309 | -- | -- | 0.239 | 19.6 | 13.04 | 357 | -- | -- |
| 16.93 | 0.192 | 12.4 | 0.639 | -- | -0.209 | -- | 0.852 | 0.276 | -- | 9.684 | 1511 | -- | -- |
| 12.92 | 0.169 | 12.5 | 0.379 | 0.304 | -- | -0.264 | -- | 0.194 | 20.3 | -- | -- | -- | -- |
| 13.13 | 0.17 | 12.5 | 0.387 | 0.304 | -- | -- | -- | 0.194 | 20.2 | -- | -- | -- | -- |
| 17.47 | 0.195 | 12.4 | 0.525 | -- | -0.219 | -- | -- | 0.264 | -- | 9.625 | 11519 | -- | -- |
| 16.97 | 0.192 | 12.5 | -- | 0.322 | -0.0934 | -- | -- | 0.162 | 20.1 | 10.99 | 364 | -- | -- |
| 18.25 | 0.2 | 12.5 | 0.384 | -- | -- | -- | -- | 0.19 | -- | -- | -- | -- | -- |
| 17.07 | 0.193 | 12.5 | -- | 0.302 | -- | -- | -- | 0.151 | 20.3 | -- | -- | -- | -- |
| 20.3 | 0.21 | 12.5 | -- | -- | 0.218 | -- | -- | 0.0825 | -- | 1.23 | 47520 | -- | -- |
| 22.14 | 0.22 | 12.5 | -- | -- | -- | -- | -- | 0.148 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.16 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 12 | 17 |
| 2 | 11.17 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 11 | 16 |
| 11 | 11.26 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 12 | 11.27 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 18 |
| 17 | 11.30 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 21 | 11.31 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 13 |
| 25 | 11.32 | humidity | 90 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 30 | 11.32 | humidity | 80 | 14400 | > th | dose dependent | sin | 9 | NA |
| 32 | 11.32 | humidity | 80 | 14400 | > th | dose dependent | rect. | 24 | 10 |
| 42 | 11.32 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 52 | 11.33 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 12 |
| 86 | 11.35 | humidity | 90 | 14400 | < th | dose independent | sin | 8 | NA |
| 89 | 11.35 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 97 | 11.35 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 100 | 11.35 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 106 | 11.35 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 15 | 14 |
| 121 | 11.36 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 181 | 11.37 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 22 |
| 197 | 11.38 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 201 | 11.38 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 14 | 9 |
| 227 | 11.39 | humidity | 90 | 14400 | > th | dose independent | sin | 9 | NA |
| 235 | 11.39 | humidity | 90 | 14400 | > th | dose independent | rect. | 24 | 10 |
| 282 | 11.40 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 283 | 11.40 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 303 | 11.40 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 20 |
| 307 | 11.40 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 18 | 7 |
| 311 | 11.40 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 14 | 11 |
| 430 | 11.42 | humidity | 80 | 14400 | > th | dose dependent | no | NA | NA |
| 495 | 11.43 | humidity | 80 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 526 | 11.43 | humidity | 80 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 539 | 11.44 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 15 | 8 |
| 576 | 11.44 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 16 |
| 614 | 11.45 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 17 |
| 750 | 11.47 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 19 |
| 773 | 11.47 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 778 | 11.47 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 7 |
| 794 | 11.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 797 | 11.48 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 816 | 11.48 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 17 |
| 839 | 11.48 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 8 |
| 841 | 11.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 8 |
| 871 | 11.48 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 20 |
| 879 | 11.49 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 912 | 11.49 | humidity | 90 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 970 | 11.50 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 996 | 11.50 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 23 |