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Os02g0146700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to PSMD2 subunit (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0159) R2 : 0.108
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.248 (0.0335) R2dN8 : 0.139 R2N8 : 0.108
σ : 0.299
deviance : 41.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.78 0.229 11 -0.294 0.265 0.716 0.256 -0.189 -0.16 14.8 24.46 340 -- --
23.84 0.227 11 -0.307 0.263 0.727 0.252 -- -0.16 14.7 24.4 341 -- --
23.99 0.228 11 -0.268 0.266 0.704 -- -0.319 -0.157 14.7 24.4 325 -- --
24.11 0.229 11 -0.312 0.261 0.735 -- -- -0.165 14.8 24.4 356 -- --
26.71 0.241 11 -0.275 -- 0.703 -- -0.28 -0.151 -- 27.28 1116 -- --
31.42 0.263 11 -0.511 0.205 -- 0.28 -- -0.302 14.2 -- -- -- --
31.72 0.264 11 -0.503 0.205 -- -- -- -0.3 14.1 -- -- -- --
26.8 0.241 11 -0.311 -- 0.687 -- -- -0.15 -- 26.76 1025 -- --
26.47 0.24 11 -- 0.277 0.869 -- -- -0.108 15 24.43 350 -- --
34.23 0.273 11 -0.512 -- -- -- -- -0.305 -- -- -- -- --
38.39 0.29 11 -- 0.214 -- -- -- -0.244 14.1 -- -- -- --
28.89 0.25 11 -- -- 0.836 -- -- -0.0871 -- 27.13 1128 -- --
41.14 0.299 11 -- -- -- -- -- -0.248 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.84 temperature 25 270 < th dose dependent rect. 4 23
8 23.99 temperature 25 270 < th dose dependent rect. 19 23
10 24.00 temperature 25 270 < th dose dependent rect. 10 23
11 24.01 temperature 25 270 < th dose dependent no NA NA
12 24.01 temperature 25 270 < th dose dependent rect. 13 23
34 24.19 temperature 25 720 < th dose dependent rect. 7 19
58 24.32 radiation 20 14400 > th dose dependent rect. 17 14
60 24.33 radiation 20 14400 > th dose independent rect. 17 14
67 24.36 radiation 20 14400 > th dose independent rect. 6 1
85 24.39 radiation 20 14400 > th dose dependent rect. 6 1
117 24.49 temperature 10 720 > th dose dependent rect. 16 12
157 24.64 humidity 50 43200 < th dose dependent rect. 14 1
202 24.70 temperature 30 720 < th dose dependent sin 15 NA
203 24.70 temperature 25 1440 < th dose dependent sin 20 NA
273 24.78 temperature 30 1440 < th dose dependent rect. 11 1
289 24.79 radiation 20 14400 < th dose independent rect. 1 5
315 24.81 temperature 25 1440 < th dose dependent rect. 14 10
347 24.84 humidity 50 43200 > th dose dependent rect. 19 1
348 24.84 humidity 90 43200 < th dose dependent rect. 18 2
350 24.84 humidity 50 43200 > th dose dependent rect. 17 6
355 24.84 humidity 50 43200 < th dose dependent rect. 13 17
364 24.85 humidity 50 43200 < th dose dependent rect. 13 7
385 24.86 humidity 50 43200 > th dose dependent rect. 18 4
386 24.86 humidity 90 43200 < th dose dependent rect. 17 5
388 24.86 humidity 90 43200 < th dose dependent rect. 16 7
405 24.87 humidity 50 14400 < th dose dependent rect. 10 2
418 24.88 humidity 80 43200 > th dose independent rect. 17 8
427 24.88 humidity 50 43200 > th dose dependent rect. 16 8
439 24.88 humidity 60 43200 < th dose dependent rect. 19 17
489 24.90 temperature 25 1440 < th dose dependent no NA NA
510 24.90 temperature 25 1440 < th dose dependent rect. 21 23
513 24.91 humidity 50 43200 > th dose independent rect. 16 1
515 24.91 humidity 50 43200 < th dose dependent sin 18 NA
550 24.91 temperature 25 1440 < th dose dependent rect. 18 23
555 24.92 humidity 50 43200 < th dose dependent sin 16 NA
574 24.92 humidity 50 43200 < th dose dependent rect. 18 21
582 24.92 temperature 25 1440 < th dose dependent rect. 13 23
596 24.93 humidity 60 43200 < th dose dependent rect. 3 9
625 24.94 temperature 10 720 > th dose dependent sin 14 NA
633 24.94 temperature 30 1440 < th dose dependent rect. 10 7
683 24.94 temperature 25 30 < th dose dependent rect. 23 23
688 24.95 humidity 50 43200 < th dose dependent no NA NA
713 24.95 humidity 50 43200 < th dose dependent rect. 4 16
774 24.95 temperature 25 30 < th dose dependent rect. 9 23
790 24.96 humidity 50 43200 < th dose independent rect. 16 1
803 24.96 humidity 60 43200 < th dose dependent sin 8 NA
904 24.98 radiation 20 14400 < th dose independent rect. 3 3
906 24.98 humidity 80 43200 < th dose independent rect. 16 9
910 24.98 temperature 30 1440 < th dose dependent rect. 10 5
956 25.00 humidity 50 43200 > th dose independent rect. 11 1
975 25.01 humidity 50 14400 < th dose independent rect. 11 1
979 25.01 humidity 90 43200 < th dose dependent sin 18 NA