BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0146400 Os02g0146400|AK071377
(358 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0147300 Similar to U2 snRNP component prp10 743 0.0
Os02g0146400 Similar to Splicing factor 3B subunit 1 (Splic... 736 0.0
Os02g0478900 Armadillo-like helical domain containing protein 514 e-146
Os02g0142300 Similar to Nuclear protein-like 495 e-140
>Os02g0147300 Similar to U2 snRNP component prp10
Length = 1158
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/358 (100%), Positives = 358/358 (100%)
Query: 1 VRQQAADLISRIAIVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 60
VRQQAADLISRIAIVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM
Sbjct: 801 VRQQAADLISRIAIVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 860
Query: 61 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEML 120
TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEML
Sbjct: 861 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEML 920
Query: 121 KAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF 180
KAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF
Sbjct: 921 KAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF 980
Query: 181 TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQ 240
TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQ
Sbjct: 981 TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQ 1040
Query: 241 TAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGPAVI 300
TAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGPAVI
Sbjct: 1041 TAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGPAVI 1100
Query: 301 LNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPALDDDGDNIYSRPELAMFV 358
LNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPALDDDGDNIYSRPELAMFV
Sbjct: 1101 LNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPALDDDGDNIYSRPELAMFV 1158
>Os02g0146400 Similar to Splicing factor 3B subunit 1 (Spliceosome associated
protein 155) (SAP 155) (SF3b155) (Pre-mRNA splicing
factor SF3b 155 kDa subunit)
Length = 358
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/358 (100%), Positives = 358/358 (100%)
Query: 1 VRQQAADLISRIAIVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 60
VRQQAADLISRIAIVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM
Sbjct: 1 VRQQAADLISRIAIVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 60
Query: 61 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEML 120
TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEML
Sbjct: 61 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEML 120
Query: 121 KAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF 180
KAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF
Sbjct: 121 KAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF 180
Query: 181 TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQ 240
TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQ
Sbjct: 181 TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQ 240
Query: 241 TAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGPAVI 300
TAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGPAVI
Sbjct: 241 TAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGPAVI 300
Query: 301 LNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPALDDDGDNIYSRPELAMFV 358
LNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPALDDDGDNIYSRPELAMFV
Sbjct: 301 LNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPALDDDGDNIYSRPELAMFV 358
>Os02g0478900 Armadillo-like helical domain containing protein
Length = 1206
Score = 514 bits (1325), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/264 (93%), Positives = 258/264 (97%)
Query: 2 RQQAADLISRIAIVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMT 61
RQ+AADL+SRIAIVMK CQEE+LM HLG +LYE LGEEYP+VLGSILGALKAIVNV+GMT
Sbjct: 929 RQRAADLMSRIAIVMKLCQEERLMCHLGHILYESLGEEYPDVLGSILGALKAIVNVVGMT 988
Query: 62 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLK 121
KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGR+ADRGAEFVPAREWMRICFELLEMLK
Sbjct: 989 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRVADRGAEFVPAREWMRICFELLEMLK 1048
Query: 122 AHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFT 181
AHKKGIRRAT NTFGYIAKAIGP+DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFT
Sbjct: 1049 AHKKGIRRATANTFGYIAKAIGPEDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFT 1108
Query: 182 VLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT 241
VLPALMNEYRVPE NV+NG+LKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT
Sbjct: 1109 VLPALMNEYRVPEFNVRNGILKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT 1168
Query: 242 AASAVKHMALGVAGLGCEDALVHL 265
AASAVKHMALGVAGLGCEDALVHL
Sbjct: 1169 AASAVKHMALGVAGLGCEDALVHL 1192
>Os02g0142300 Similar to Nuclear protein-like
Length = 737
Score = 495 bits (1275), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/252 (96%), Positives = 247/252 (98%)
Query: 1 VRQQAADLISRIAIVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 60
VRQQAADLISRIAIVMK CQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM
Sbjct: 482 VRQQAADLISRIAIVMKHCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 541
Query: 61 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEML 120
TKMTP IK+LLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEML
Sbjct: 542 TKMTPLIKNLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEML 601
Query: 121 KAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF 180
KAHKKGIRRATVNTFGYIAKAIG QDVLATLLN LKVQERQNRVCTTVAIAIVAETCSPF
Sbjct: 602 KAHKKGIRRATVNTFGYIAKAIGLQDVLATLLNYLKVQERQNRVCTTVAIAIVAETCSPF 661
Query: 181 TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQ 240
TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPL++DALMDRDLVH Q
Sbjct: 662 TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLVDDALMDRDLVHWQ 721
Query: 241 TAASAVKHMALG 252
TAASAVKHMALG
Sbjct: 722 TAASAVKHMALG 733
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.139 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,266,344
Number of extensions: 442138
Number of successful extensions: 967
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 967
Number of HSP's successfully gapped: 4
Length of query: 358
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 256
Effective length of database: 11,709,973
Effective search space: 2997753088
Effective search space used: 2997753088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)