Os02g0146400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Splicing factor 3B subunit 1 (Spliceosome associated protein 155) (SAP 155) (SF3b155) (Pre-mRNA splicing factor SF3b 155 kDa subunit).
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Os02g0146400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Splicing factor 3B subunit 1 (Spliceosome associated protein 155) (SAP 155) (SF3b155) (Pre-mRNA splicing factor SF3b 155 kDa subunit).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.63 | 0.219 | 11.6 | 1.38 | 0.251 | 0.239 | -0.197 | 1.42 | 0.323 | 13.6 | 21.5 | 3030 | -- | -- |
| 24.89 | 0.232 | 11.6 | 1.03 | 0.241 | 0.16 | -0.236 | -- | 0.246 | 13.5 | 24.7 | 3464 | -- | -- |
| 21.6 | 0.216 | 11.6 | 1.41 | 0.256 | 0.186 | -- | 1.39 | 0.328 | 13.7 | 21.7 | 2483 | -- | -- |
| 24.97 | 0.233 | 11.6 | 1 | 0.27 | 0.175 | -- | -- | 0.227 | 13.6 | 24.72 | 3652 | -- | -- |
| 25.56 | 0.235 | 11.6 | 1.44 | -- | 0.115 | -- | 1.33 | 0.336 | -- | 21.8 | 1858 | -- | -- |
| 25.68 | 0.238 | 11.6 | 1.08 | 0.251 | -- | -0.191 | -- | 0.272 | 13.6 | -- | -- | -- | -- |
| 25.82 | 0.238 | 11.6 | 1.07 | 0.251 | -- | -- | -- | 0.271 | 13.8 | -- | -- | -- | -- |
| 27.78 | 0.247 | 11.7 | 1.02 | -- | 0.142 | -- | -- | 0.194 | -- | 24.8 | 3273 | -- | -- |
| 30.11 | 0.256 | 11.7 | -- | 0.267 | 0.749 | -- | -- | -0.105 | 13.7 | 21.7 | 47520 | -- | -- |
| 29.66 | 0.254 | 11.6 | 1.06 | -- | -- | -- | -- | 0.265 | -- | -- | -- | -- | -- |
| 56.1 | 0.35 | 11.7 | -- | 0.232 | -- | -- | -- | 0.152 | 13.6 | -- | -- | -- | -- |
| 34.44 | 0.273 | 11.7 | -- | -- | 0.732 | -- | -- | -0.104 | -- | 21.7 | 47520 | -- | -- |
| 59.39 | 0.36 | 11.7 | -- | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.93 | wind | 5 | 4320 | > th | dose dependent | rect. | 8 | 2 |
| 3 | 21.00 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 4 | 21.05 | wind | 7 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 5 | 21.08 | wind | 7 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 6 | 21.08 | wind | 5 | 4320 | > th | dose dependent | rect. | 19 | 15 |
| 9 | 21.16 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 18 | 21.32 | wind | 7 | 4320 | < th | dose independent | rect. | 19 | 15 |
| 19 | 21.33 | wind | 5 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 20 | 21.34 | wind | 7 | 4320 | > th | dose independent | rect. | 19 | 15 |
| 27 | 21.39 | wind | 7 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 30 | 21.41 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 34 | 21.42 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 37 | 21.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 41 | 21.45 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 42 | 21.45 | wind | 7 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 44 | 21.45 | wind | 5 | 4320 | > th | dose dependent | rect. | 19 | 10 |
| 57 | 21.53 | wind | 7 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 64 | 21.58 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 67 | 21.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 70 | 21.59 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 82 | 21.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 105 | 21.67 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 110 | 21.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 131 | 21.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 144 | 21.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 148 | 21.73 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 153 | 21.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 183 | 21.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 200 | 21.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 203 | 21.78 | temperature | 20 | 1440 | > th | dose independent | sin | 14 | NA |
| 208 | 21.78 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 249 | 21.80 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 259 | 21.81 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 270 | 21.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 298 | 21.82 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 323 | 21.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 19 |
| 326 | 21.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 22 |
| 329 | 21.83 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 378 | 21.85 | temperature | 20 | 1440 | < th | dose independent | sin | 14 | NA |
| 436 | 21.86 | wind | 5 | 4320 | > th | dose dependent | sin | 10 | NA |
| 453 | 21.87 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 553 | 21.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 21 |
| 598 | 21.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 631 | 21.91 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 731 | 21.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 810 | 21.95 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 880 | 21.97 | wind | 7 | 4320 | < th | dose independent | sin | 11 | NA |
| 949 | 21.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 972 | 21.99 | wind | 7 | 4320 | > th | dose independent | sin | 10 | NA |
| 975 | 21.99 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |