BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0146400 Os02g0146400|AK071377
         (358 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64270.1  | chr5:25706909-25710718 FORWARD LENGTH=1270         717   0.0  

>AT5G64270.1 | chr5:25706909-25710718 FORWARD LENGTH=1270
          Length = 1269

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/358 (96%), Positives = 352/358 (98%)

Query: 1    VRQQAADLISRIAIVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 60
            VRQQAADLISRIA+VMKQC EEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM
Sbjct: 912  VRQQAADLISRIAVVMKQCGEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 971

Query: 61   TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEML 120
            TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEML
Sbjct: 972  TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEML 1031

Query: 121  KAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF 180
            KAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF
Sbjct: 1032 KAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF 1091

Query: 181  TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQ 240
            TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQ
Sbjct: 1092 TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQ 1151

Query: 241  TAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGPAVI 300
            TAASAVKHMALGVAGLGCEDALVHLLN++WPNIFETSPHVINAVMEAIEGMRVALG AVI
Sbjct: 1152 TAASAVKHMALGVAGLGCEDALVHLLNFIWPNIFETSPHVINAVMEAIEGMRVALGAAVI 1211

Query: 301  LNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPALDDDGDNIYSRPELAMFV 358
            LNYCLQGLFHPARKVREVYWKIYNSLYIGAQD LVAAYP L+D+ +N+YSRPEL MFV
Sbjct: 1212 LNYCLQGLFHPARKVREVYWKIYNSLYIGAQDTLVAAYPVLEDEQNNVYSRPELTMFV 1269



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.139    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,237,981
Number of extensions: 286542
Number of successful extensions: 768
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 771
Number of HSP's successfully gapped: 3
Length of query: 358
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,364,969
Effective search space: 2158162002
Effective search space used: 2158162002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)