BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0142300 Os02g0142300|AK067944
(737 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0142300 Similar to Nuclear protein-like 1451 0.0
Os02g0147300 Similar to U2 snRNP component prp10 1332 0.0
Os02g0478900 Armadillo-like helical domain containing protein 1288 0.0
Os02g0146400 Similar to Splicing factor 3B subunit 1 (Splic... 496 e-140
>Os02g0142300 Similar to Nuclear protein-like
Length = 737
Score = 1451 bits (3755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 711/737 (96%), Positives = 711/737 (96%)
Query: 1 MKPEDYQYFGTLLNXXXXXXXXXXXXXXRKIMKLLLKVKNGTPPQRKTALRQLTDKAREF 60
MKPEDYQYFGTLLN RKIMKLLLKVKNGTPPQRKTALRQLTDKAREF
Sbjct: 1 MKPEDYQYFGTLLNEEEGEQLSPEEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREF 60
Query: 61 GAGPLFNKILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPFVHKILVVIEPLLIDED 120
GAGPLFNKILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPFVHKILVVIEPLLIDED
Sbjct: 61 GAGPLFNKILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPFVHKILVVIEPLLIDED 120
Query: 121 YYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLP 180
YYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLP
Sbjct: 121 YYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLP 180
Query: 181 FLKAVCQSKKSWQARHTGIKIVQQIAILMGCAVLPHLESVVEIIEHGLSDENQKVRTITX 240
FLKAVCQSKKSWQARHTGIKIVQQIAILMGCAVLPHLESVVEIIEHGLSDENQKVRTIT
Sbjct: 181 FLKAVCQSKKSWQARHTGIKIVQQIAILMGCAVLPHLESVVEIIEHGLSDENQKVRTITA 240
Query: 241 XXXXXXXXXXXPYGIESFDTVLKPLWKGIRSNRGKVLAAFLKAIGFIIPLMDALYASYYT 300
PYGIESFDTVLKPLWKGIRSNRGKVLAAFLKAIGFIIPLMDALYASYYT
Sbjct: 241 LSLAALAEAAAPYGIESFDTVLKPLWKGIRSNRGKVLAAFLKAIGFIIPLMDALYASYYT 300
Query: 301 KEVMQILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIWNDILPEFFHHFWVRRMALD 360
KEVMQILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIWNDILPEFFHHFWVRRMALD
Sbjct: 301 KEVMQILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIWNDILPEFFHHFWVRRMALD 360
Query: 361 RRNYKQLVETTVEMANKVGVADIVGRIVEDLKDESEPYRRMVMETVEKVVANLGASDIDA 420
RRNYKQLVETTVEMANKVGVADIVGRIVEDLKDESEPYRRMVMETVEKVVANLGASDIDA
Sbjct: 361 RRNYKQLVETTVEMANKVGVADIVGRIVEDLKDESEPYRRMVMETVEKVVANLGASDIDA 420
Query: 421 RLEELLIDGILYAFQEQASDDANVMLNGFGAVVNALGQGVKPYLPQICGTIKWRLNNKSA 480
RLEELLIDGILYAFQEQASDDANVMLNGFGAVVNALGQGVKPYLPQICGTIKWRLNNKSA
Sbjct: 421 RLEELLIDGILYAFQEQASDDANVMLNGFGAVVNALGQGVKPYLPQICGTIKWRLNNKSA 480
Query: 481 KVRQQAADLISRIAIVMKHCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 540
KVRQQAADLISRIAIVMKHCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG
Sbjct: 481 KVRQQAADLISRIAIVMKHCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 540
Query: 541 MTKMTPLIKNLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEM 600
MTKMTPLIKNLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEM
Sbjct: 541 MTKMTPLIKNLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEM 600
Query: 601 LKAHKKGIRRATVNTFGYIAKAIGLQDVLATLLNYLKVQERQNRVCTTVAIAIVAETCSP 660
LKAHKKGIRRATVNTFGYIAKAIGLQDVLATLLNYLKVQERQNRVCTTVAIAIVAETCSP
Sbjct: 601 LKAHKKGIRRATVNTFGYIAKAIGLQDVLATLLNYLKVQERQNRVCTTVAIAIVAETCSP 660
Query: 661 FTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLVDDALMDRDLVHW 720
FTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLVDDALMDRDLVHW
Sbjct: 661 FTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLVDDALMDRDLVHW 720
Query: 721 QTAASAVKHMALGAKHI 737
QTAASAVKHMALGAKHI
Sbjct: 721 QTAASAVKHMALGAKHI 737
>Os02g0147300 Similar to U2 snRNP component prp10
Length = 1158
Score = 1332 bits (3447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 655/685 (95%), Positives = 663/685 (96%)
Query: 49 ALRQLTDKAREFGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPFVHKI 108
ALRQLTDKAREFGAGPLFNKILPLLMQPT+EDQERHLLVKVIDRVLYKLDELVRPFVHKI
Sbjct: 368 ALRQLTDKAREFGAGPLFNKILPLLMQPTIEDQERHLLVKVIDRVLYKLDELVRPFVHKI 427
Query: 109 LVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSV 168
LVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSV
Sbjct: 428 LVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSV 487
Query: 169 VASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILMGCAVLPHLESVVEIIEHGL 228
VASALG PALLPFLKAVCQSKKSWQARHTGIKIVQQIAILMGCAVLPHL+S+VEIIEHGL
Sbjct: 488 VASALGTPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILMGCAVLPHLKSLVEIIEHGL 547
Query: 229 SDENQKVRTITXXXXXXXXXXXXPYGIESFDTVLKPLWKGIRSNRGKVLAAFLKAIGFII 288
SDENQKVRTIT PYGIESFDTVLKPLWKGIRS+RGKVLAAFLKAIGFII
Sbjct: 548 SDENQKVRTITALSLATLAEAAAPYGIESFDTVLKPLWKGIRSHRGKVLAAFLKAIGFII 607
Query: 289 PLMDALYASYYTKEVMQILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIWNDILPEF 348
PLMDALYASYYTKEVMQILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYI NDILPEF
Sbjct: 608 PLMDALYASYYTKEVMQILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRNDILPEF 667
Query: 349 FHHFWVRRMALDRRNYKQLVETTVEMANKVGVADIVGRIVEDLKDESEPYRRMVMETVEK 408
F HFWVRRMALDRRNYKQLVETTVEMANKVGVADIVGRIVEDLKDESEPYRRMVMET+EK
Sbjct: 668 FRHFWVRRMALDRRNYKQLVETTVEMANKVGVADIVGRIVEDLKDESEPYRRMVMETIEK 727
Query: 409 VVANLGASDIDARLEELLIDGILYAFQEQASDDANVMLNGFGAVVNALGQGVKPYLPQIC 468
VVANLGASDIDARLEELLIDGILYAFQEQ SDDANVMLNGFGAVVNALGQ VKPYLPQIC
Sbjct: 728 VVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRVKPYLPQIC 787
Query: 469 GTIKWRLNNKSAKVRQQAADLISRIAIVMKHCQEEQLMGHLGVVLYEYLGEEYPEVLGSI 528
GTIKWRLNNKSAKVRQQAADLISRIAIVMK CQEEQLMGHLGVVLYEYLGEEYPEVLGSI
Sbjct: 788 GTIKWRLNNKSAKVRQQAADLISRIAIVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSI 847
Query: 529 LGALKAIVNVIGMTKMTPLIKNLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAR 588
LGALKAIVNVIGMTKMTP IK+LLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAR
Sbjct: 848 LGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAR 907
Query: 589 EWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGLQDVLATLLNYLKVQERQNRVCTT 648
EWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIG QDVLATLLN LKVQERQNRVCTT
Sbjct: 908 EWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTT 967
Query: 649 VAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLV 708
VAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPL+
Sbjct: 968 VAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLL 1027
Query: 709 DDALMDRDLVHWQTAASAVKHMALG 733
+DALMDRDLVH QTAASAVKHMALG
Sbjct: 1028 EDALMDRDLVHRQTAASAVKHMALG 1052
>Os02g0478900 Armadillo-like helical domain containing protein
Length = 1206
Score = 1288 bits (3333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 631/734 (85%), Positives = 667/734 (90%), Gaps = 1/734 (0%)
Query: 1 MKPEDYQYFGTLLNX-XXXXXXXXXXXXXRKIMKLLLKVKNGTPPQRKTALRQLTDKARE 59
MKPEDYQYFGTLLN RKI+KLL KVKNGTP QRK ALRQLTDKA+E
Sbjct: 446 MKPEDYQYFGTLLNEGEEEEKLSPEEHKERKILKLLFKVKNGTPQQRKAALRQLTDKAQE 505
Query: 60 FGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPFVHKILVVIEPLLIDE 119
FGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRV+YKLD+LVRPFVHKILVV+EPLLIDE
Sbjct: 506 FGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRVIYKLDDLVRPFVHKILVVVEPLLIDE 565
Query: 120 DYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALL 179
DYYARVE R+IISNLSKAAGLATMIA MRPDIDN DEYVRNTTARAFSVVAS LGIPALL
Sbjct: 566 DYYARVEARQIISNLSKAAGLATMIATMRPDIDNTDEYVRNTTARAFSVVASGLGIPALL 625
Query: 180 PFLKAVCQSKKSWQARHTGIKIVQQIAILMGCAVLPHLESVVEIIEHGLSDENQKVRTIT 239
PFLKAVCQSKKSWQARHTGIKIVQQIAILMGCAVLPHL S+V+IIEHGLSDENQKVRTIT
Sbjct: 626 PFLKAVCQSKKSWQARHTGIKIVQQIAILMGCAVLPHLRSLVDIIEHGLSDENQKVRTIT 685
Query: 240 XXXXXXXXXXXXPYGIESFDTVLKPLWKGIRSNRGKVLAAFLKAIGFIIPLMDALYASYY 299
PYGIESFDTVL+PLWKG +S+RGKVLAAFLKA+GFIIPLMD YASYY
Sbjct: 686 ALSLAALAEAAAPYGIESFDTVLRPLWKGTKSHRGKVLAAFLKAVGFIIPLMDVEYASYY 745
Query: 300 TKEVMQILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIWNDILPEFFHHFWVRRMAL 359
T+ V+ ILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYI N ILPEFF HFW+RRMAL
Sbjct: 746 TRGVIPILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRNGILPEFFRHFWIRRMAL 805
Query: 360 DRRNYKQLVETTVEMANKVGVADIVGRIVEDLKDESEPYRRMVMETVEKVVANLGASDID 419
DRRNYKQLVETTVE+ANKVGVADIVGRIVEDLKDESEPYRRMVMET+EKVVA+LGASDID
Sbjct: 806 DRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVAHLGASDID 865
Query: 420 ARLEELLIDGILYAFQEQASDDANVMLNGFGAVVNALGQGVKPYLPQICGTIKWRLNNKS 479
EELLIDGI+Y FQ+Q SDD+NV+LNGF V NALGQ VKPY+PQICG IKW LN S
Sbjct: 866 RHQEELLIDGIVYTFQQQTSDDSNVILNGFETVANALGQRVKPYVPQICGIIKWMLNTSS 925
Query: 480 AKVRQQAADLISRIAIVMKHCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI 539
AK RQ+AADL+SRIAIVMK CQEE+LM HLG +LYE LGEEYP+VLGSILGALKAIVNV+
Sbjct: 926 AKARQRAADLMSRIAIVMKLCQEERLMCHLGHILYESLGEEYPDVLGSILGALKAIVNVV 985
Query: 540 GMTKMTPLIKNLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLE 599
GMTKMTP IK+LLPRLTPILKNRHEKVQENCIDLVGR+ADRGAEFVPAREWMRICFELLE
Sbjct: 986 GMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRVADRGAEFVPAREWMRICFELLE 1045
Query: 600 MLKAHKKGIRRATVNTFGYIAKAIGLQDVLATLLNYLKVQERQNRVCTTVAIAIVAETCS 659
MLKAHKKGIRRAT NTFGYIAKAIG +DVLATLLN LKVQERQNRVCTTVAIAIVAETCS
Sbjct: 1046 MLKAHKKGIRRATANTFGYIAKAIGPEDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS 1105
Query: 660 PFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLVDDALMDRDLVH 719
PFTVLPALMNEYRVPE NV+NG+LKSLSFLFEYIGEMGKDYIYAVTPL++DALMDRDLVH
Sbjct: 1106 PFTVLPALMNEYRVPEFNVRNGILKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVH 1165
Query: 720 WQTAASAVKHMALG 733
QTAASAVKHMALG
Sbjct: 1166 RQTAASAVKHMALG 1179
>Os02g0146400 Similar to Splicing factor 3B subunit 1 (Spliceosome associated
protein 155) (SAP 155) (SF3b155) (Pre-mRNA splicing
factor SF3b 155 kDa subunit)
Length = 358
Score = 496 bits (1277), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/252 (96%), Positives = 247/252 (98%)
Query: 482 VRQQAADLISRIAIVMKHCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 541
VRQQAADLISRIAIVMK CQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM
Sbjct: 1 VRQQAADLISRIAIVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 60
Query: 542 TKMTPLIKNLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEML 601
TKMTP IK+LLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEML
Sbjct: 61 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEML 120
Query: 602 KAHKKGIRRATVNTFGYIAKAIGLQDVLATLLNYLKVQERQNRVCTTVAIAIVAETCSPF 661
KAHKKGIRRATVNTFGYIAKAIG QDVLATLLN LKVQERQNRVCTTVAIAIVAETCSPF
Sbjct: 121 KAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF 180
Query: 662 TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLVDDALMDRDLVHWQ 721
TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPL++DALMDRDLVH Q
Sbjct: 181 TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQ 240
Query: 722 TAASAVKHMALG 733
TAASAVKHMALG
Sbjct: 241 TAASAVKHMALG 252
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,734,029
Number of extensions: 836662
Number of successful extensions: 2168
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2148
Number of HSP's successfully gapped: 4
Length of query: 737
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 629
Effective length of database: 11,396,689
Effective search space: 7168517381
Effective search space used: 7168517381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 160 (66.2 bits)