BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0132500 Os02g0132500|AK070887
         (163 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0132500  Similar to Common plant regulatory factor 7         194   3e-50
Os06g0192200                                                       91   5e-19
Os09g0306400  Eukaryotic transcription factor, DNA-binding d...    89   1e-18
Os06g0626801                                                       83   8e-17
Os01g0542700  Eukaryotic transcription factor, DNA-binding d...    68   3e-12
Os11g0496966                                                       66   1e-11

>Os02g0132500 Similar to Common plant regulatory factor 7
          Length = 163

 Score =  194 bits (492), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/137 (75%), Positives = 104/137 (75%)

Query: 27  EEELRALMEQRRAKRMLSNRESARRSRMRKQRHLDDLTAQVAHLRRENAHVXXXXXXXXX 86
           EEELRALMEQRRAKRMLSNRESARRSRMRKQRHLDDLTAQVAHLRRENAHV         
Sbjct: 27  EEELRALMEQRRAKRMLSNRESARRSRMRKQRHLDDLTAQVAHLRRENAHVATALGLTTQ 86

Query: 87  XXXXVDAENAVLRTQAAELAARLASLNDILSCINTNGXXXXXXXXXXXXXXXXXXXXFDS 146
               VDAENAVLRTQAAELAARLASLNDILSCINTNG                    FDS
Sbjct: 87  GLLAVDAENAVLRTQAAELAARLASLNDILSCINTNGAAAAAAAALTVAAATDPLLAFDS 146

Query: 147 AAFDDLFRSSPELFQLC 163
           AAFDDLFRSSPELFQLC
Sbjct: 147 AAFDDLFRSSPELFQLC 163



>Os06g0192200 
          Length = 135

 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 49/63 (77%)

Query: 54  MRKQRHLDDLTAQVAHLRRENAHVXXXXXXXXXXXXXVDAENAVLRTQAAELAARLASLN 113
           MRKQ HLDDLT+QVAHLRR+NAHV             VDAENAVLRTQAAELAARLASLN
Sbjct: 1   MRKQSHLDDLTSQVAHLRRDNAHVAAALSLTTQGLLVVDAENAVLRTQAAELAARLASLN 60

Query: 114 DIL 116
           DIL
Sbjct: 61  DIL 63



>Os09g0306400 Eukaryotic transcription factor, DNA-binding domain containing
           protein
          Length = 153

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 62/91 (68%)

Query: 30  LRALMEQRRAKRMLSNRESARRSRMRKQRHLDDLTAQVAHLRRENAHVXXXXXXXXXXXX 89
           L+A ME++R +R  SNRESARRSRMRKQ+HLD+LT+QV  L+ +N  +            
Sbjct: 24  LQAQMEKKRKRRKESNRESARRSRMRKQQHLDELTSQVNQLKNQNQQLSMALSLTTQNLV 83

Query: 90  XVDAENAVLRTQAAELAARLASLNDILSCIN 120
            V A+N+VL+TQ  EL +RL +L DIL C+N
Sbjct: 84  AVQAQNSVLQTQELELQSRLCALTDILMCMN 114



>Os06g0626801 
          Length = 71

 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/51 (86%), Positives = 45/51 (88%), Gaps = 3/51 (5%)

Query: 27 EEELRALMEQRRAKRMLSNRESARRSRMRKQRHLDDLTAQVAHLRRENAHV 77
          EEELRALME+RRAK MLSNRESAR   MRKQRHLDDLTAQVAHL REN HV
Sbjct: 16 EEELRALMEKRRAKMMLSNRESAR---MRKQRHLDDLTAQVAHLHRENVHV 63



>Os01g0542700 Eukaryotic transcription factor, DNA-binding domain containing
           protein
          Length = 182

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 55/89 (61%)

Query: 32  ALMEQRRAKRMLSNRESARRSRMRKQRHLDDLTAQVAHLRRENAHVXXXXXXXXXXXXXV 91
           A+ME+R+ KR  SNR SA+RSR RKQ+ LD+L  QVA LR  N  +             V
Sbjct: 37  AVMEERKRKRKESNRLSAQRSRARKQQQLDELAGQVAALRARNGALGLAAREAARRCAAV 96

Query: 92  DAENAVLRTQAAELAARLASLNDILSCIN 120
            AEN +LR ++ ELAARL SL D+  C++
Sbjct: 97  RAENELLRARSVELAARLDSLTDLAQCLH 125



>Os11g0496966 
          Length = 121

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 36/51 (70%)

Query: 50  RRSRMRKQRHLDDLTAQVAHLRRENAHVXXXXXXXXXXXXXVDAENAVLRT 100
           R+ RMRKQRHLD LTAQVAHLRR+NAHV             VDAENAVLRT
Sbjct: 71  RQLRMRKQRHLDGLTAQVAHLRRDNAHVAIVLGLTTQGLLAVDAENAVLRT 121



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.129    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,691,474
Number of extensions: 61281
Number of successful extensions: 349
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 13
Length of query: 163
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 70
Effective length of database: 12,179,899
Effective search space: 852592930
Effective search space used: 852592930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 152 (63.2 bits)