Os01g0542700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Eukaryotic transcription factor, DNA-binding domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0542700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Eukaryotic transcription factor, DNA-binding domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 157.38 | 0.589 | 12 | 2.08 | 1.91 | -1.19 | -0.0936 | 3.17 | 0.934 | 3.96 | 23.4 | 703 | 23.9 | -- |
| 172.13 | 0.611 | 12 | 2.8 | 1.9 | -1.34 | -0.761 | -- | 1.13 | 3.65 | 21.6 | 830 | 0.984 | -- |
| 157.4 | 0.584 | 12 | 2.08 | 1.91 | -1.19 | -- | 3.2 | 0.932 | 3.97 | 23.4 | 700 | 23.9 | -- |
| 174.91 | 0.616 | 11.9 | 2.78 | 1.93 | -1.42 | -- | -- | 1.11 | 3.75 | 21.6 | 794 | 0.774 | -- |
| 218.31 | 0.688 | 11.9 | 3 | -- | -2.15 | -- | 2.15 | 1.2 | -- | 34.4 | 4177 | 1.92 | -- |
| 211.91 | 0.682 | 11.9 | 3.1 | 2.15 | -- | -1.86 | -- | 1.49 | 2.92 | -- | -- | -- | -- |
| 223.24 | 0.7 | 11.9 | 3.14 | 2.15 | -- | -- | -- | 1.5 | 3.08 | -- | -- | -- | -- |
| 222.95 | 0.695 | 11.9 | 3.08 | -- | -2.2 | -- | -- | 1.4 | -- | 34.5 | 11335 | 1.38 | -- |
| 218.4 | 0.688 | 12.1 | -- | 2.12 | -2.48 | -- | -- | 0.513 | 3.09 | 18.59 | 47520 | 6.54 | -- |
| 487.31 | 1.03 | 11.9 | 3.23 | -- | -- | -- | -- | 1.56 | -- | -- | -- | -- | -- |
| 483.06 | 1.03 | 12 | -- | 2.21 | -- | -- | -- | 1.15 | 3.08 | -- | -- | -- | -- |
| 471.51 | 1.01 | 11.9 | -- | -- | -2.21 | -- | -- | 1.4 | -- | 33.79 | 11333 | 1.43 | -- |
| 762.74 | 1.29 | 11.9 | -- | -- | -- | -- | -- | 1.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 158.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 5 | 159.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 5 |
| 6 | 159.31 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 8 | 159.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 7 |
| 26 | 161.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 7 |
| 31 | 161.41 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 3 |
| 58 | 162.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 64 | 162.99 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 6 |
| 152 | 167.04 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 3 |
| 192 | 168.37 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 194 | 168.39 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 2 |
| 224 | 169.34 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 1 |
| 286 | 170.96 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 293 | 171.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 376 | 172.97 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 530 | 176.65 | temperature | 25 | 720 | < th | dose independent | sin | 5 | NA |
| 592 | 177.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 648 | 178.69 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 660 | 178.90 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 672 | 179.10 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 12 |
| 704 | 179.59 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 758 | 180.56 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 769 | 180.66 | radiation | 40 | 10 | < th | dose independent | sin | 8 | NA |
| 791 | 180.91 | temperature | 30 | 10 | < th | dose independent | rect. | 9 | 7 |
| 832 | 181.42 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 14 |
| 837 | 181.53 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 862 | 181.92 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 877 | 182.17 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 903 | 182.45 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 941 | 182.66 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 951 | 182.78 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 992 | 183.22 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 6 |