Os02g0132500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Common plant regulatory factor 7.
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Os02g0132500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Common plant regulatory factor 7.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.32 | 0.359 | 12.3 | 0.456 | 0.268 | -0.752 | -0.699 | 0.604 | 0.0758 | 3.77 | 24.1 | 5488 | -- | -- |
| 58.64 | 0.357 | 12.3 | 0.659 | 0.269 | -0.711 | -0.707 | -- | 0.123 | 3.64 | 23.7 | 5404 | -- | -- |
| 59.74 | 0.36 | 12.3 | 0.413 | 0.273 | -0.76 | -- | 0.78 | 0.0634 | 3.96 | 24.3 | 5678 | -- | -- |
| 59.07 | 0.358 | 12.3 | 0.736 | 0.255 | -0.667 | -- | -- | 0.11 | 4.1 | 23.5 | 2829 | -- | -- |
| 63.65 | 0.372 | 12.3 | 0.38 | -- | -0.809 | -- | 0.874 | 0.0599 | -- | 24.38 | 5499 | -- | -- |
| 76.45 | 0.41 | 12.2 | 1.01 | 0.316 | -- | -0.636 | -- | 0.371 | 3.54 | -- | -- | -- | -- |
| 77.7 | 0.413 | 12.2 | 1.02 | 0.313 | -- | -- | -- | 0.374 | 3.61 | -- | -- | -- | -- |
| 62.22 | 0.367 | 12.3 | 0.75 | -- | -0.721 | -- | -- | 0.0819 | -- | 23.6 | 2736 | -- | -- |
| 62.75 | 0.369 | 12.3 | -- | 0.3 | -0.982 | -- | -- | -0.0479 | 4.06 | 20.6 | 45637 | -- | -- |
| 83.15 | 0.426 | 12.2 | 1.04 | -- | -- | -- | -- | 0.383 | -- | -- | -- | -- | -- |
| 105.27 | 0.48 | 12.3 | -- | 0.333 | -- | -- | -- | 0.261 | 3.59 | -- | -- | -- | -- |
| 67.46 | 0.383 | 12.3 | -- | -- | -0.996 | -- | -- | -0.0429 | -- | 20.61 | 45667 | -- | -- |
| 111.45 | 0.493 | 12.3 | -- | -- | -- | -- | -- | 0.268 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.29 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 91 | 57.66 | temperature | 20 | 4320 | > th | dose dependent | sin | 10 | NA |
| 98 | 57.72 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 100 | 57.72 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 109 | 57.84 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 133 | 58.05 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 169 | 58.15 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 211 | 58.24 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 3 |
| 292 | 58.35 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 347 | 58.44 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 351 | 58.44 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 534 | 58.68 | temperature | 30 | 4320 | < th | dose dependent | sin | 11 | NA |
| 587 | 58.74 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 599 | 58.75 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 601 | 58.75 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 633 | 58.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 787 | 58.97 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 980 | 59.15 | temperature | 30 | 14400 | < th | dose independent | sin | 15 | NA |