Os09g0306400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Eukaryotic transcription factor, DNA-binding domain containing protein.
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Os09g0306400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Eukaryotic transcription factor, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.43 | 0.334 | 14.2 | 0.329 | 0.221 | -0.838 | -0.855 | 0.188 | 0.295 | 18.7 | 24.49 | 843 | -- | -- |
| 50.33 | 0.33 | 14.2 | 0.353 | 0.236 | -0.863 | -0.888 | -- | 0.3 | 18.8 | 24.22 | 913 | -- | -- |
| 52.19 | 0.336 | 14.2 | 0.318 | 0.231 | -0.827 | -- | 0.35 | 0.29 | 18.8 | 24.4 | 877 | -- | -- |
| 52.34 | 0.337 | 14.2 | 0.368 | 0.229 | -0.872 | -- | -- | 0.3 | 18.9 | 24.1 | 905 | -- | -- |
| 54.14 | 0.343 | 14.3 | 0.0882 | -- | -0.868 | -- | 1.9 | 0.256 | -- | 35.01 | 607 | -- | -- |
| 61.19 | 0.367 | 14.2 | 0.598 | 0.285 | -- | -0.819 | -- | 0.472 | 19.7 | -- | -- | -- | -- |
| 63.05 | 0.372 | 14.2 | 0.617 | 0.284 | -- | -- | -- | 0.471 | 20.2 | -- | -- | -- | -- |
| 54.82 | 0.345 | 14.2 | 0.392 | -- | -0.864 | -- | -- | 0.292 | -- | 24.9 | 736 | -- | -- |
| 55.57 | 0.347 | 14.2 | -- | 0.246 | -1 | -- | -- | 0.244 | 18.7 | 24.29 | 915 | -- | -- |
| 67.49 | 0.384 | 14.2 | 0.615 | -- | -- | -- | -- | 0.467 | -- | -- | -- | -- | -- |
| 73.09 | 0.4 | 14.2 | -- | 0.281 | -- | -- | -- | 0.402 | 20.3 | -- | -- | -- | -- |
| 57.8 | 0.354 | 14.2 | -- | -- | -1.06 | -- | -- | 0.223 | -- | 24.35 | 839 | -- | -- |
| 77.47 | 0.411 | 14.2 | -- | -- | -- | -- | -- | 0.399 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.05 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 2 | 48.45 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 4 | 48.92 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 5 | 48.95 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 26 | 49.63 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 34 | 49.89 | temperature | 25.0 | 720 | < th | dose dependent | sin | 4 | NA |
| 79 | 50.36 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 2 | 14 |
| 97 | 50.48 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 126 | 50.58 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 146 | 50.66 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 180 | 50.81 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 190 | 50.85 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 2 | 6 |
| 234 | 50.96 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 280 | 51.11 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 12 |
| 287 | 51.13 | temperature | 10.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 301 | 51.17 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 320 | 51.23 | wind | 1.0 | 43200 | > th | dose independent | rect. | 22 | 9 |
| 322 | 51.23 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 323 | 51.23 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 326 | 51.24 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 351 | 51.30 | wind | 1.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 391 | 51.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 421 | 51.47 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 14 |
| 435 | 51.51 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 438 | 51.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 461 | 51.57 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 470 | 51.58 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 16 |
| 522 | 51.69 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 530 | 51.71 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 590 | 51.80 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 591 | 51.80 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 598 | 51.81 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 646 | 51.86 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 654 | 51.86 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 666 | 51.88 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 12 |
| 667 | 51.88 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 734 | 51.96 | temperature | 20.0 | 720 | < th | dose independent | sin | 3 | NA |
| 797 | 52.02 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 800 | 52.02 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 10 |
| 814 | 52.04 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 10 |
| 819 | 52.04 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 825 | 52.06 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 855 | 52.09 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 861 | 52.10 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 5 |
| 864 | 52.10 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 896 | 52.13 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 915 | 52.16 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 6 |
| 919 | 52.16 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 11 |
| 940 | 52.19 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 9 |
| 964 | 52.22 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 973 | 52.24 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 989 | 52.25 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 3 |