BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0112100 Os02g0112100|AB008519
(533 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0112600 Similar to BCH2 1016 0.0
Os02g0112100 Similar to BCH2 1016 0.0
Os01g0704100 Similar to Membrane transporter 514 e-146
Os01g0547600 269 4e-72
>Os02g0112600 Similar to BCH2
Length = 533
Score = 1016 bits (2627), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/533 (94%), Positives = 502/533 (94%)
Query: 1 MDSSTVGAPGSSLHGVTGREPAFAFSTEVGGEDAAAASKFDLPVDSEHKAKTIRLLSFAN 60
MDSSTVGAPGSSLHGVTGREPAFAFSTEVGGEDAAAASKFDLPVDSEHKAKTIRLLSFAN
Sbjct: 1 MDSSTVGAPGSSLHGVTGREPAFAFSTEVGGEDAAAASKFDLPVDSEHKAKTIRLLSFAN 60
Query: 61 PHMRTFHLSWISFFSCFVSTFAAAPLVPIIRDNLNLTKADIGNAGVASVSGSIFSRLAMG 120
PHMRTFHLSWISFFSCFVSTFAAAPLVPIIRDNLNLTKADIGNAGVASVSGSIFSRLAMG
Sbjct: 61 PHMRTFHLSWISFFSCFVSTFAAAPLVPIIRDNLNLTKADIGNAGVASVSGSIFSRLAMG 120
Query: 121 AICDMLGPRYGCAFLIMLAAPTVFCMSLIDSAAGYIAVRFLIGFSLATFVSCQYWMSTMF 180
AICDMLGPRYGCAFLIMLAAPTVFCMSLIDSAAGYIAVRFLIGFSLATFVSCQYWMSTMF
Sbjct: 121 AICDMLGPRYGCAFLIMLAAPTVFCMSLIDSAAGYIAVRFLIGFSLATFVSCQYWMSTMF 180
Query: 181 NSKIIGLVNXXXXXXXXXXXXXTQLIMPLVYDVIRKCGATPFTAWRLAYFVPGTLHVVMG 240
NSKIIGLVN TQLIMPLVYDVIRKCGATPFTAWRLAYFVPGTLHVVMG
Sbjct: 181 NSKIIGLVNGLAAGWGNMGGGATQLIMPLVYDVIRKCGATPFTAWRLAYFVPGTLHVVMG 240
Query: 241 VLVLTLGQDLPDGNLRSLQKKGDVNRDSFSRVLWYAVTNYRTWIFVLLYGYSMGVELTTD 300
VLVLTLGQDLPDGNLRSLQKKGDVNRDSFSRVLWYAVTNYRTWIFVLLYGYSMGVELTTD
Sbjct: 241 VLVLTLGQDLPDGNLRSLQKKGDVNRDSFSRVLWYAVTNYRTWIFVLLYGYSMGVELTTD 300
Query: 301 NVIAEYFYDRFDLDLRVAGIIAASFGMANIVARPTGGLLSDLGARYFGMRARLWNIWILQ 360
NVIAEYFYDRFDLDLRVAGIIAASFGMANIVARPTGGLLSDLGARYFGMRARLWNIWILQ
Sbjct: 301 NVIAEYFYDRFDLDLRVAGIIAASFGMANIVARPTGGLLSDLGARYFGMRARLWNIWILQ 360
Query: 361 TAGGAFCLLLGRASTLPTSVVCMVLFSFCAQAACGAIFGVIPFVSRRSLGIISXXXXXXX 420
TAGGAFCLLLGRASTLPTSVVCMVLFSFCAQAACGAIFGVIPFVSRRSLGIIS
Sbjct: 361 TAGGAFCLLLGRASTLPTSVVCMVLFSFCAQAACGAIFGVIPFVSRRSLGIISGMTGAGG 420
Query: 421 XXXXXLTQLLFFTSSRYSTGTGLEYMGIMIMACTLPVVLVHFPQWGSMFLPPNAGAEEEH 480
LTQLLFFTSSRYSTGTGLEYMGIMIMACTLPVVLVHFPQWGSMFLPPNAGAEEEH
Sbjct: 421 NFGAGLTQLLFFTSSRYSTGTGLEYMGIMIMACTLPVVLVHFPQWGSMFLPPNAGAEEEH 480
Query: 481 YYGSEWSEQEKSKGLHGASLKFAENSRSERGRRNVINXXXXXXTPPNNSPEHA 533
YYGSEWSEQEKSKGLHGASLKFAENSRSERGRRNVIN TPPNNSPEHA
Sbjct: 481 YYGSEWSEQEKSKGLHGASLKFAENSRSERGRRNVINAAAAAATPPNNSPEHA 533
>Os02g0112100 Similar to BCH2
Length = 533
Score = 1016 bits (2627), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/533 (94%), Positives = 502/533 (94%)
Query: 1 MDSSTVGAPGSSLHGVTGREPAFAFSTEVGGEDAAAASKFDLPVDSEHKAKTIRLLSFAN 60
MDSSTVGAPGSSLHGVTGREPAFAFSTEVGGEDAAAASKFDLPVDSEHKAKTIRLLSFAN
Sbjct: 1 MDSSTVGAPGSSLHGVTGREPAFAFSTEVGGEDAAAASKFDLPVDSEHKAKTIRLLSFAN 60
Query: 61 PHMRTFHLSWISFFSCFVSTFAAAPLVPIIRDNLNLTKADIGNAGVASVSGSIFSRLAMG 120
PHMRTFHLSWISFFSCFVSTFAAAPLVPIIRDNLNLTKADIGNAGVASVSGSIFSRLAMG
Sbjct: 61 PHMRTFHLSWISFFSCFVSTFAAAPLVPIIRDNLNLTKADIGNAGVASVSGSIFSRLAMG 120
Query: 121 AICDMLGPRYGCAFLIMLAAPTVFCMSLIDSAAGYIAVRFLIGFSLATFVSCQYWMSTMF 180
AICDMLGPRYGCAFLIMLAAPTVFCMSLIDSAAGYIAVRFLIGFSLATFVSCQYWMSTMF
Sbjct: 121 AICDMLGPRYGCAFLIMLAAPTVFCMSLIDSAAGYIAVRFLIGFSLATFVSCQYWMSTMF 180
Query: 181 NSKIIGLVNXXXXXXXXXXXXXTQLIMPLVYDVIRKCGATPFTAWRLAYFVPGTLHVVMG 240
NSKIIGLVN TQLIMPLVYDVIRKCGATPFTAWRLAYFVPGTLHVVMG
Sbjct: 181 NSKIIGLVNGLAAGWGNMGGGATQLIMPLVYDVIRKCGATPFTAWRLAYFVPGTLHVVMG 240
Query: 241 VLVLTLGQDLPDGNLRSLQKKGDVNRDSFSRVLWYAVTNYRTWIFVLLYGYSMGVELTTD 300
VLVLTLGQDLPDGNLRSLQKKGDVNRDSFSRVLWYAVTNYRTWIFVLLYGYSMGVELTTD
Sbjct: 241 VLVLTLGQDLPDGNLRSLQKKGDVNRDSFSRVLWYAVTNYRTWIFVLLYGYSMGVELTTD 300
Query: 301 NVIAEYFYDRFDLDLRVAGIIAASFGMANIVARPTGGLLSDLGARYFGMRARLWNIWILQ 360
NVIAEYFYDRFDLDLRVAGIIAASFGMANIVARPTGGLLSDLGARYFGMRARLWNIWILQ
Sbjct: 301 NVIAEYFYDRFDLDLRVAGIIAASFGMANIVARPTGGLLSDLGARYFGMRARLWNIWILQ 360
Query: 361 TAGGAFCLLLGRASTLPTSVVCMVLFSFCAQAACGAIFGVIPFVSRRSLGIISXXXXXXX 420
TAGGAFCLLLGRASTLPTSVVCMVLFSFCAQAACGAIFGVIPFVSRRSLGIIS
Sbjct: 361 TAGGAFCLLLGRASTLPTSVVCMVLFSFCAQAACGAIFGVIPFVSRRSLGIISGMTGAGG 420
Query: 421 XXXXXLTQLLFFTSSRYSTGTGLEYMGIMIMACTLPVVLVHFPQWGSMFLPPNAGAEEEH 480
LTQLLFFTSSRYSTGTGLEYMGIMIMACTLPVVLVHFPQWGSMFLPPNAGAEEEH
Sbjct: 421 NFGAGLTQLLFFTSSRYSTGTGLEYMGIMIMACTLPVVLVHFPQWGSMFLPPNAGAEEEH 480
Query: 481 YYGSEWSEQEKSKGLHGASLKFAENSRSERGRRNVINXXXXXXTPPNNSPEHA 533
YYGSEWSEQEKSKGLHGASLKFAENSRSERGRRNVIN TPPNNSPEHA
Sbjct: 481 YYGSEWSEQEKSKGLHGASLKFAENSRSERGRRNVINAAAAAATPPNNSPEHA 533
>Os01g0704100 Similar to Membrane transporter
Length = 486
Score = 514 bits (1325), Expect = e-146, Method: Compositional matrix adjust.
Identities = 252/507 (49%), Positives = 325/507 (64%), Gaps = 32/507 (6%)
Query: 26 STEVGGEDAAAAS-KFDLPVDSEHKAKTIRLLSFANPHMRTFHLSWISFFSCFVSTFAAA 84
+ EV G +AA +F +PVDS+ KA L SFA PHM +FH++W SFF CFVSTFA
Sbjct: 7 AMEVEGVEAAGGKPRFRMPVDSDLKATEFWLFSFARPHMASFHMAWFSFFCCFVSTFA-- 64
Query: 85 PLVPIIRDNLNLTKADIGNAGVASVSGSIFSRLAMGAICDMLGPRYGCAFLIMLAAPTVF 144
+F+RLAMG CD++GPR A LI+L P V+
Sbjct: 65 ----------------------------VFARLAMGTACDLVGPRLASASLILLTTPAVY 96
Query: 145 CMSLIDSAAGYIAVRFLIGFSLATFVSCQYWMSTMFNSKIIGLVNXXXXXXXXXXXXXTQ 204
C S+I S +GY+ VRF G SLA+FVS Q+WMS+MF++ +GL N Q
Sbjct: 97 CSSIIQSPSGYLLVRFFTGISLASFVSAQFWMSSMFSAPKVGLANGVAGGWGNLGGGAVQ 156
Query: 205 LIMPLVYDVIRKCGATPFTAWRLAYFVPGTLHVVMGVLVLTLGQDLPDGNLRSLQKKGDV 264
L+MPLVY+ I K G+TPFTAWR+A+F+PG + + VL GQD+P GN L K GD+
Sbjct: 157 LLMPLVYEAIHKIGSTPFTAWRIAFFIPGLMQTFSAIAVLAFGQDMPGGNYGKLHKTGDM 216
Query: 265 NRDSFSRVLWYAVTNYRTWIFVLLYGYSMGVELTTDNVIAEYFYDRFDLDLRVAGIIAAS 324
++DSF VL +A+TNYR WI L YGYS GVELT DNV+ +YFYDRFD++L+ AG+IAAS
Sbjct: 217 HKDSFGNVLRHALTNYRGWILALTYGYSFGVELTIDNVVHQYFYDRFDVNLQTAGLIAAS 276
Query: 325 FGMANIVARPTGGLLSDLGARYFGMRARLWNIWILQTAGGAFCLLLGRAS-TLPTSVVCM 383
FGMANI++RP GGLLSD + +GMR RLW +W +QT GG C++LG + SV M
Sbjct: 277 FGMANIISRPGGGLLSDWLSSRYGMRGRLWGLWTVQTIGGVLCVVLGIVDFSFAASVAVM 336
Query: 384 VLFSFCAQAACGAIFGVIPFVSRRSLGIISXXXXXXXXXXXXLTQLLFFTSSRYSTGTGL 443
VLFSF QAACG FG++PFVSRRSLG+IS LTQ +FF ++Y T TG+
Sbjct: 337 VLFSFFVQAACGLTFGIVPFVSRRSLGLISGMTGGGGNVGAVLTQYIFFHGTKYKTETGI 396
Query: 444 EYMGIMIMACTLPVVLVHFPQWGSMFLPPNAGAEEEHYYGSEWSEQEKSKGLHGASLKFA 503
+YMG+MI+ACTLPV+L++FPQWG M + P GA E YY EWS+ E+ KG + AS++FA
Sbjct: 397 KYMGLMIIACTLPVMLIYFPQWGGMLVGPRKGATAEEYYSREWSDHEREKGFNAASVRFA 456
Query: 504 ENSRSERGRRNVINXXXXXXTPPNNSP 530
ENS E GR + P + SP
Sbjct: 457 ENSVREGGRSSANGGQPRHTVPVDASP 483
>Os01g0547600
Length = 482
Score = 269 bits (687), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 176/435 (40%), Positives = 246/435 (56%), Gaps = 7/435 (1%)
Query: 47 EHKAKTIRLLSFANPHMRTFHLSWISFFSCFVSTFAAAPLVPIIRDNLNLTKADIGNAGV 106
E +A +R ++ + PH + FHL+W+S F+CF + FAA P++P +R L L +D A V
Sbjct: 30 EGRATELRPMALSRPHTQAFHLAWMSLFACFFAAFAAPPILPAMRPALVLAPSDASAAAV 89
Query: 107 ASVSGSIFSRLAMGAICDMLGPRYGCAFLIMLAAPTVFCMSLID-SAAGYIAVRFLIGFS 165
AS+S ++ RLAMG CD+LGPR ++ A + ++ S AG++A+RF+ G S
Sbjct: 90 ASLSATLVGRLAMGPACDLLGPRRASGVASLVCALALALAAVFASSPAGFVALRFVAGLS 149
Query: 166 LATFVSCQYWMSTMFNSKIIGLVNXXXXXXXXXXXXXTQLIMPLVYD-VIRKCGATPFTA 224
LA FV+ Q+WMS +F +GL N Q++MP+ YD V+ + G A
Sbjct: 150 LANFVANQHWMSRIFAPSAVGLANAVAAGWANVGSAAAQVVMPVAYDAVVLRLGVPVTVA 209
Query: 225 WRLAYFVPGTLHVVMGVLVLTLGQDLPDGNLRSLQKKGDVNRDSFSRVLWYAVTNYRTWI 284
WR+ Y +P + V G+ VL DLP G G R SF V+ V +YR W+
Sbjct: 210 WRVTYLLPCAMLVTTGLAVLAFPYDLPGGGGGRCPGGGGGRRRSFWAVVRGGVGDYRAWL 269
Query: 285 FVLLYGYSMGVELTTDNVIAEYFYDRFDLDLRVAGIIAASFGMANIVARPTGGLLSDLGA 344
L YG+ GVEL +NV A++F RF L + AG AA FG N VARP GG+ SD A
Sbjct: 270 LGLTYGHCYGVELIMENVAADFFRRRFRLPMEAAGAAAACFGAMNAVARPAGGVASDEVA 329
Query: 345 RYFGMRARLWNIWILQTAGGAFCLLLGR-----ASTLPTSVVCMVLFSFCAQAACGAIFG 399
R FGMR RLW +W +Q+AG A C+L+GR A +L +V MV + QAA G FG
Sbjct: 330 RRFGMRGRLWALWAVQSAGAALCVLVGRMGAAEAPSLAATVAVMVACAAFVQAASGLTFG 389
Query: 400 VIPFVSRRSLGIISXXXXXXXXXXXXLTQLLFFTSSRYSTGTGLEYMGIMIMACTLPVVL 459
++PFV +RSLG++S +T LFF+ SRY+ + GI + CTLPV L
Sbjct: 390 IVPFVCKRSLGVVSGMTASGGAVGAIVTNRLFFSGSRYTVEEAISCTGITSLLCTLPVAL 449
Query: 460 VHFPQWGSMFLPPNA 474
+HF + G MF P+A
Sbjct: 450 IHFRRQGGMFCGPSA 464
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,480,359
Number of extensions: 678214
Number of successful extensions: 1789
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1785
Number of HSP's successfully gapped: 4
Length of query: 533
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 427
Effective length of database: 11,501,117
Effective search space: 4910976959
Effective search space used: 4910976959
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)