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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0112100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to BCH2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0256) R2 : 0.376
β1 : 0.348 (0.0945) R2dD : 0.0198 R2D : 0.047
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.65 (0.297) R2dE : 0.0638 R2E : 0.185
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.86 (0.911) R2dD*E : 0.153 R2D*E : 0.278
γ1 : -0.0275 (0.0549) R2dN8 : 0.000468 R2N8 : 0.00104
σ : 0.476
deviance : 104.65
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_____
C
peak time of C : --
E
wheather : wind
threshold : 2.465
memory length : 305
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14.9
open length of G : 4.72

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
103.12 0.477 3.02 0.318 0.0184 1.56 -0.692 8.41 -0.033 0.882 2.552 300 15 4.77
119.39 0.509 3.04 0.33 0.0136 3.21 -0.483 -- 0.0273 1.99 2.424 307 14.9 5.07
104.68 0.477 3.02 0.351 0.0485 1.61 -- 7.79 -0.032 22.6 2.437 305 15 4.66
120.75 0.512 3.04 0.387 0.0065 3.06 -- -- 0.0209 1.55 2.4 303 14.9 5.07
104.65 0.476 3.02 0.348 -- 1.65 -- 7.86 -0.0275 -- 2.465 305 14.9 4.72
145.61 0.566 3.07 0.614 0.283 -- 1.69 -- -0.0672 19.1 -- -- -- --
152.46 0.578 3.07 0.577 0.299 -- -- -- -0.0654 20.4 -- -- -- --
120.74 0.512 3.04 0.402 -- 3.06 -- -- 0.0128 -- 2.432 303 14.9 5.07
124.94 0.521 3.05 -- 0.0041 3.21 -- -- -0.0225 1.61 2.479 307 14.9 5.08
157.43 0.586 3.06 0.576 -- -- -- -- -0.0685 -- -- -- -- --
161.24 0.594 3.08 -- 0.297 -- -- -- -0.13 20.5 -- -- -- --
124.93 0.521 3.05 -- -- 3.23 -- -- -0.0174 -- 2.41 303 15 5.05
166.18 0.602 3.07 -- -- -- -- -- -0.132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 109.12 wind 3 270 < th dose independent rect. 15 5
2 109.17 wind 3 270 < th dose dependent rect. 15 5
3 110.49 wind 3 90 < th dose dependent rect. 17 3
10 113.73 humidity 70 270 < th dose independent rect. 17 1
26 115.09 humidity 70 270 < th dose dependent rect. 17 1
46 118.57 wind 3 90 < th dose dependent rect. 19 1
109 123.22 wind 3 720 < th dose independent rect. 9 11
150 124.69 humidity 50 720 < th dose dependent rect. 14 2
151 124.70 humidity 80 30 > th dose independent rect. 16 4
159 124.82 wind 5 720 < th dose dependent rect. 9 11
178 125.27 humidity 50 720 < th dose independent rect. 13 2
182 125.39 radiation 30 720 > th dose independent rect. 15 1
184 125.43 wind 3 720 > th dose independent rect. 10 9
224 125.86 radiation 30 720 > th dose dependent rect. 15 1
318 126.99 wind 3 720 > th dose independent rect. 14 5
370 127.48 atmosphere 1010 43200 < th dose independent rect. 20 1
379 127.54 wind 3 720 > th dose independent rect. 14 3
389 127.65 atmosphere 1010 43200 > th dose independent rect. 21 1
408 127.81 humidity 70 10 > th dose dependent rect. 17 4
429 127.84 humidity 50 14400 < th dose dependent rect. 15 1
437 127.88 wind 1 14400 > th dose independent rect. 16 1
443 127.93 atmosphere 1010 43200 < th dose independent rect. 13 1
462 127.98 humidity 50 43200 < th dose independent rect. 12 1
476 128.06 humidity 50 720 > th dose independent rect. 12 3
483 128.10 wind 3 720 < th dose independent sin 21 NA
486 128.11 humidity 50 720 > th dose independent rect. 20 19
494 128.14 wind 1 270 > th dose dependent rect. 10 13
495 128.15 atmosphere 1010 43200 > th dose independent rect. 13 1
527 128.24 wind 5 43200 < th dose independent rect. 24 1
536 128.26 atmosphere 1010 43200 < th dose independent rect. 13 10
545 128.27 wind 5 720 < th dose dependent sin 21 NA
546 128.28 wind 3 720 > th dose independent sin 21 NA
547 128.28 atmosphere 1010 43200 > th dose independent rect. 23 1
548 128.28 atmosphere 1010 43200 > th dose independent rect. 9 5
559 128.29 atmosphere 1010 43200 < th dose independent rect. 9 5
564 128.29 atmosphere 1010 43200 < th dose independent rect. 8 14
571 128.29 humidity 90 1440 > th dose dependent rect. 6 1
609 128.32 atmosphere 1010 43200 < th dose independent sin 17 NA
611 128.32 atmosphere 1005 43200 > th dose independent rect. 17 1
616 128.32 atmosphere 1010 43200 > th dose independent rect. 20 18
649 128.34 atmosphere 1010 43200 < th dose independent rect. 20 18
673 128.35 atmosphere 1010 43200 < th dose independent rect. 19 22
683 128.36 atmosphere 1010 43200 > th dose independent rect. 20 15
711 128.37 atmosphere 1010 43200 > th dose independent rect. 8 16
729 128.37 atmosphere 1010 43200 < th dose independent rect. 16 23
771 128.38 atmosphere 1005 43200 > th dose dependent rect. 16 1
773 128.39 atmosphere 1010 43200 < th dose independent no NA NA
774 128.39 atmosphere 1010 43200 > th dose independent rect. 9 2
801 128.39 atmosphere 1010 43200 < th dose independent rect. 12 21
822 128.40 humidity 50 43200 > th dose independent rect. 12 1
834 128.40 atmosphere 1010 43200 > th dose independent rect. 12 12
879 128.41 atmosphere 1010 43200 > th dose independent sin 13 NA
881 128.41 atmosphere 1005 43200 < th dose independent rect. 17 1
925 128.42 atmosphere 1010 43200 > th dose independent sin 11 NA
950 128.42 atmosphere 1010 43200 < th dose independent rect. 16 17
981 128.43 atmosphere 1010 43200 > th dose independent no NA NA
983 128.43 humidity 50 43200 < th dose independent rect. 12 4