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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0112600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to BCH2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.017) R2 : 0.0146
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0929 (0.0358) R2dN8 : 0.0188 R2N8 : 0.0146
σ : 0.32
deviance : 47.01
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.29 0.32 2.95 0.0301 0.0711 -0.1 -0.153 -0.36 0.0842 6.2 70.79 4447 -- --
46.46 0.317 2.95 0.0167 0.0619 -0.1 -0.152 -- 0.078 6.27 71.95 4129 -- --
46.34 0.317 2.95 0.0297 0.0704 -0.0989 -- -0.37 0.0852 6.46 70.89 4447 -- --
46.5 0.318 2.95 0.00517 0.0648 -0.103 -- -- 0.0761 6.9 71 4129 -- --
46.6 0.318 2.95 0.0302 -- -0.0983 -- -0.361 0.0862 -- 70.88 4383 -- --
46.7 0.32 2.94 0.00963 0.0708 -- -0.155 -- 0.0919 6.2 -- -- -- --
46.76 0.32 2.94 0.00811 0.0702 -- -- -- 0.0925 6.48 -- -- -- --
46.74 0.318 2.95 0.0104 -- -0.134 -- -- 0.0713 -- 72 4242 -- --
46.49 0.318 2.95 -- 0.0708 -0.128 -- -- 0.0706 7.01 71.03 4129 -- --
47.01 0.32 2.94 0.00988 -- -- -- -- 0.094 -- -- -- -- --
46.76 0.32 2.94 -- 0.0703 -- -- -- 0.0916 6.47 -- -- -- --
46.74 0.318 2.95 -- -- -0.134 -- -- 0.0698 -- 72 4239 -- --
47.01 0.32 2.94 -- -- -- -- -- 0.0929 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.30 temperature 25.0 10 > th dose independent rect. 4 1
2 44.31 temperature 25.0 30 > th dose dependent rect. 4 1
7 44.49 humidity 90.0 10 < th dose independent rect. 4 1
9 44.49 wind 1.0 30 > th dose dependent rect. 4 1
13 44.81 humidity 90.0 10 < th dose dependent rect. 4 1
15 44.82 temperature 25.0 10 > th dose independent rect. 2 3
17 44.84 wind 1.0 30 > th dose independent rect. 4 1
27 45.16 atmosphere 1005.0 10 > th dose dependent rect. 4 1
32 45.19 temperature 25.0 10 > th dose dependent rect. 2 3
35 45.27 wind 1.0 30 < th dose independent rect. 10 1
36 45.27 temperature 10.0 1440 > th dose independent rect. 11 1
40 45.27 atmosphere 995.0 1440 > th dose independent rect. 11 1
43 45.27 precipitation 0.1 1440 < th dose independent rect. 11 1
44 45.27 temperature 10.0 1440 > th dose independent rect. 12 23
47 45.27 wind 1.0 30 < th dose dependent rect. 10 1
48 45.27 precipitation 0.1 1440 < th dose dependent rect. 11 1
56 45.34 humidity 70.0 30 < th dose independent rect. 10 1
58 45.35 temperature 25.0 30 > th dose dependent rect. 10 1
59 45.36 atmosphere 1010.0 30 < th dose independent rect. 10 1
62 45.42 temperature 25.0 30 > th dose independent rect. 10 1
63 45.42 atmosphere 1000.0 10 > th dose independent rect. 5 23
64 45.42 humidity 70.0 30 < th dose dependent rect. 10 1
66 45.43 radiation 40.0 30 < th dose independent rect. 10 1
68 45.44 atmosphere 1005.0 10 > th dose independent rect. 4 1
71 45.45 radiation 20.0 30 > th dose independent rect. 10 1
73 45.46 wind 5.0 10 < th dose independent rect. 4 1
78 45.46 temperature 30.0 10 < th dose dependent rect. 4 1
82 45.47 temperature 10.0 10 > th dose independent rect. 4 1
84 45.47 temperature 30.0 10 < th dose independent rect. 4 1
85 45.47 humidity 50.0 10 > th dose independent rect. 4 1
89 45.47 atmosphere 995.0 10 > th dose independent rect. 4 1
91 45.47 atmosphere 1005.0 30 > th dose independent rect. 10 1
92 45.47 atmosphere 1010.0 10 < th dose independent rect. 4 1
94 45.47 radiation 1.0 10 < th dose independent rect. 4 1
100 45.47 precipitation 0.1 10 < th dose independent rect. 4 1
101 45.47 temperature 10.0 10 > th dose independent rect. 5 23
104 45.47 radiation 10.0 10 < th dose dependent rect. 4 1
108 45.47 precipitation 0.1 10 < th dose dependent rect. 4 1
114 45.49 wind 9.0 10 < th dose dependent rect. 4 1
115 45.49 temperature 10.0 10 > th dose dependent rect. 4 1
143 45.50 precipitation 0.1 30 < th dose independent rect. 5 23
146 45.50 atmosphere 995.0 30 > th dose dependent rect. 10 1
154 45.50 precipitation 0.1 30 < th dose dependent rect. 5 23
155 45.51 temperature 30.0 30 < th dose independent rect. 10 1
156 45.51 humidity 60.0 30 > th dose independent rect. 10 1
157 45.51 wind 5.0 30 < th dose dependent rect. 10 1
163 45.51 humidity 50.0 10 > th dose dependent rect. 4 1
170 45.52 wind 7.0 1440 < th dose independent rect. 23 1
176 45.53 temperature 10.0 30 > th dose independent rect. 10 1
179 45.53 humidity 90.0 30 < th dose independent rect. 10 1
183 45.53 precipitation 0.1 30 < th dose independent rect. 10 1
185 45.53 temperature 10.0 30 > th dose independent rect. 11 23
188 45.53 temperature 25.0 30 > th dose dependent rect. 22 1
191 45.53 precipitation 0.1 30 < th dose dependent rect. 10 1
194 45.54 wind 1.0 30 > th dose independent rect. 10 1
197 45.54 temperature 25.0 30 > th dose independent rect. 22 1
198 45.54 temperature 10.0 1440 > th dose independent rect. 23 1
201 45.54 temperature 30.0 1440 < th dose independent rect. 23 1
205 45.54 humidity 50.0 1440 > th dose independent rect. 23 1
216 45.54 humidity 90.0 30 < th dose independent rect. 22 1
217 45.54 atmosphere 995.0 1440 > th dose independent rect. 23 1
218 45.54 radiation 1.0 1440 < th dose independent rect. 23 1
238 45.54 wind 9.0 30 < th dose independent rect. 23 23
239 45.54 temperature 10.0 1440 > th dose independent rect. 24 23
244 45.54 humidity 90.0 30 < th dose dependent rect. 22 1
245 45.54 atmosphere 1015.0 30 < th dose dependent rect. 4 1
246 45.54 radiation 1.0 1440 < th dose dependent rect. 23 1
253 45.55 atmosphere 1005.0 30 > th dose independent rect. 22 1
256 45.55 temperature 15.0 30 > th dose dependent rect. 22 1
259 45.55 atmosphere 1005.0 30 > th dose dependent rect. 22 1
265 45.56 atmosphere 995.0 30 > th dose dependent rect. 22 1
268 45.56 radiation 40.0 30 < th dose dependent rect. 10 1
270 45.57 wind 1.0 30 > th dose independent rect. 22 1
271 45.57 wind 7.0 1440 < th dose independent rect. 5 1
273 45.57 wind 3.0 30 < th dose independent rect. 22 1
277 45.57 temperature 10.0 1440 > th dose independent rect. 5 1
280 45.57 temperature 10.0 30 > th dose independent rect. 22 1
283 45.57 temperature 30.0 1440 < th dose independent rect. 5 1
287 45.57 temperature 30.0 30 < th dose independent rect. 22 1
288 45.57 humidity 50.0 1440 > th dose independent rect. 5 1
297 45.57 humidity 50.0 30 > th dose independent rect. 22 1
300 45.57 atmosphere 995.0 1440 > th dose independent rect. 5 1
302 45.57 atmosphere 1015.0 1440 < th dose independent rect. 5 1
303 45.57 atmosphere 1010.0 30 < th dose independent rect. 22 1
305 45.57 radiation 20.0 1440 < th dose independent rect. 5 1
314 45.57 radiation 1.0 30 < th dose independent rect. 22 1
319 45.57 precipitation 0.1 30 < th dose independent rect. 22 1
321 45.57 temperature 10.0 1440 > th dose independent rect. 6 23
324 45.57 temperature 10.0 30 > th dose independent rect. 23 23
325 45.57 wind 5.0 30 < th dose dependent rect. 22 1
329 45.57 radiation 1.0 30 < th dose dependent rect. 22 1
335 45.57 precipitation 0.1 30 < th dose dependent rect. 22 1
341 45.58 wind 1.0 30 > th dose dependent rect. 22 1
344 45.58 humidity 50.0 30 > th dose dependent rect. 22 1
349 45.59 radiation 1.0 30 > th dose dependent rect. 10 1
351 45.60 atmosphere 1015.0 30 < th dose dependent rect. 22 1
362 45.62 temperature 30.0 30 < th dose dependent rect. 22 1
376 45.64 atmosphere 1015.0 30 < th dose dependent rect. 10 1
401 45.67 humidity 50.0 30 > th dose dependent rect. 10 1
422 45.70 wind 1.0 30 > th dose dependent rect. 10 1
429 45.72 wind 9.0 30 < th dose independent rect. 5 23
430 45.72 humidity 50.0 30 > th dose independent rect. 5 23
439 45.75 temperature 25.0 270 > th dose independent rect. 1 1
453 45.81 temperature 25.0 10 > th dose independent rect. 22 7
458 45.82 atmosphere 995.0 30 > th dose independent rect. 23 23
499 45.91 precipitation 0.1 1440 < th dose independent rect. 23 1
500 45.91 temperature 30.0 30 < th dose independent rect. 5 23
501 45.91 precipitation 0.1 1440 < th dose dependent rect. 23 1
508 45.93 wind 9.0 30 < th dose independent rect. 11 23
509 45.93 precipitation 0.1 30 < th dose independent rect. 23 23
513 45.93 precipitation 0.1 30 < th dose dependent rect. 23 23
552 46.00 humidity 50.0 30 > th dose independent rect. 23 23
595 46.03 atmosphere 995.0 30 > th dose dependent rect. 5 23
615 46.04 atmosphere 1005.0 270 > th dose dependent rect. 1 1
630 46.05 atmosphere 995.0 30 > th dose dependent rect. 5 14
637 46.06 humidity 90.0 10 < th dose independent rect. 3 20
648 46.06 radiation 1.0 90 < th dose dependent rect. 3 20
671 46.08 wind 1.0 30 > th dose independent rect. 2 21
689 46.10 atmosphere 1000.0 720 > th dose independent rect. 5 6
692 46.10 temperature 25.0 10 > th dose independent rect. 9 20
699 46.10 atmosphere 995.0 30 > th dose dependent rect. 23 23
748 46.12 radiation 20.0 10 < th dose independent rect. 23 11
784 46.13 wind 1.0 90 > th dose independent rect. 5 22
792 46.13 temperature 10.0 90 > th dose dependent rect. 23 3
800 46.14 temperature 30.0 720 < th dose independent rect. 5 6
802 46.14 humidity 70.0 90 > th dose independent rect. 23 10
804 46.14 atmosphere 995.0 720 > th dose independent rect. 23 18
805 46.14 precipitation 0.1 720 < th dose independent rect. 11 18
825 46.14 temperature 10.0 30 > th dose dependent rect. 9 14
826 46.14 precipitation 0.1 720 < th dose dependent rect. 11 18
829 46.14 radiation 1.0 90 < th dose dependent rect. 1 23
840 46.15 humidity 90.0 270 < th dose independent rect. 1 1
849 46.15 humidity 70.0 10 > th dose independent rect. 23 11
875 46.16 wind 1.0 90 > th dose independent rect. 19 10
880 46.16 radiation 1.0 90 < th dose independent rect. 3 20
883 46.16 atmosphere 1015.0 30 < th dose independent rect. 5 23
885 46.16 radiation 30.0 720 > th dose dependent rect. 8 1
903 46.17 temperature 15.0 90 > th dose independent rect. 23 3
904 46.17 atmosphere 1000.0 90 > th dose independent rect. 23 3
905 46.17 precipitation 0.1 720 < th dose independent rect. 17 6
908 46.17 temperature 25.0 10 > th dose independent rect. 14 15
910 46.17 temperature 25.0 90 > th dose independent rect. 9 20
912 46.17 precipitation 0.1 90 < th dose independent rect. 2 21
915 46.17 temperature 30.0 30 < th dose independent rect. 23 23
922 46.17 precipitation 0.1 720 < th dose dependent rect. 17 6
927 46.17 temperature 10.0 90 > th dose dependent rect. 2 21
928 46.17 precipitation 0.1 90 < th dose dependent rect. 2 21
963 46.18 wind 1.0 720 > th dose independent rect. 5 6
964 46.18 wind 1.0 720 > th dose independent rect. 17 6
975 46.18 atmosphere 1010.0 90 < th dose independent rect. 2 21
991 46.18 temperature 25.0 30 > th dose dependent rect. 24 9