BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0969200 Os01g0969200|J075011I12
         (114 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0969200  Hypothetical protein                                235   5e-63
Os01g0967800  Conserved hypothetical protein                      140   2e-34
Os01g0970200                                                      137   2e-33
Os05g0173500  Conserved hypothetical protein                       94   1e-20
Os01g0956500  Conserved hypothetical protein                       85   1e-17

>Os01g0969200 Hypothetical protein
          Length = 114

 Score =  235 bits (600), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   FKELDDVYFEIWQRVTKQKMSFRDAMKEVYELNRFPVRQQKMKYVLEINDCSQWEAEFHT 60
           FKELDDVYFEIWQRVTKQKMSFRDAMKEVYELNRFPVRQQKMKYVLEINDCSQWEAEFHT
Sbjct: 1   FKELDDVYFEIWQRVTKQKMSFRDAMKEVYELNRFPVRQQKMKYVLEINDCSQWEAEFHT 60

Query: 61  CTACITEEVAEDQVLGLIADAVKKLRDKPRFYDDYIKKKINIAQAIGLITTEEA 114
           CTACITEEVAEDQVLGLIADAVKKLRDKPRFYDDYIKKKINIAQAIGLITTEEA
Sbjct: 61  CTACITEEVAEDQVLGLIADAVKKLRDKPRFYDDYIKKKINIAQAIGLITTEEA 114



>Os01g0967800 Conserved hypothetical protein
          Length = 550

 Score =  140 bits (354), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/111 (60%), Positives = 86/111 (77%), Gaps = 1/111 (0%)

Query: 2   KELDDVYFEIWQRVTKQKMSFRDAMKEVYELNRFPVRQQKMKYVLEINDCSQWEAEFHTC 61
           K++D +YFEIWQRV  QK SFRD+++EVY LN+FP RQ KMK  LE N+CS  E  FH C
Sbjct: 436 KDMDSLYFEIWQRVNMQKKSFRDSLEEVYNLNKFPSRQDKMKDALE-NNCSHMETVFHVC 494

Query: 62  TACITEEVAEDQVLGLIADAVKKLRDKPRFYDDYIKKKINIAQAIGLITTE 112
           TA +T E+AED+ L LIA AV+   +K +FY+ YI+KKI+IAQAIGLI+T+
Sbjct: 495 TASVTSEIAEDKALELIAKAVESRMNKAKFYEQYIEKKIDIAQAIGLISTD 545



>Os01g0970200 
          Length = 333

 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/88 (80%), Positives = 73/88 (82%), Gaps = 11/88 (12%)

Query: 1   FKELDDVYFEIWQRVTKQKMSFRDAMKEVYELNRFPVRQQKMKYVLEINDCSQWEAEFHT 60
           F ELD VYFEIWQRVTKQKMSFRDAMKEVYELNRFPVRQQKMKYVLEINDCSQWEA    
Sbjct: 246 FHELDGVYFEIWQRVTKQKMSFRDAMKEVYELNRFPVRQQKMKYVLEINDCSQWEA---- 301

Query: 61  CTACITEEVAEDQVLGLIADAVKKLRDK 88
                  EVAED+VLGLIA+AVKKL  K
Sbjct: 302 -------EVAEDEVLGLIAEAVKKLARK 322



>Os05g0173500 Conserved hypothetical protein
          Length = 628

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 72/112 (64%), Gaps = 2/112 (1%)

Query: 1   FKELDDVYFEIWQRVTKQKMSFRDAMKEVYELNRFPVRQQKMKYVLEINDC--SQWEAEF 58
           +K+ D VYF+IW+RV K+KM+FR+A+ EVY  + FPVR+  +KY L+         + ++
Sbjct: 506 YKDFDGVYFKIWKRVAKRKMNFREALLEVYREDMFPVRKNGIKYELDNTQLRFKSMKEKY 565

Query: 59  HTCTACITEEVAEDQVLGLIADAVKKLRDKPRFYDDYIKKKINIAQAIGLIT 110
               AC+ E V ED+V  LI +AV K++ KP  Y DY +KK+ I+  I LIT
Sbjct: 566 DAHVACLDESVPEDEVRQLIKEAVIKMKPKPHTYLDYARKKLQISMNIDLIT 617



>Os01g0956500 Conserved hypothetical protein
          Length = 396

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 65/112 (58%), Gaps = 2/112 (1%)

Query: 1   FKELDDVYFEIWQRVTKQKMSFRDAMKEVYELNRFPVRQQKMKYVLEINDC--SQWEAEF 58
           +K+ D VYFE+W+RV KQKM F DA+ E+Y  + FP+R   +K  L          +  +
Sbjct: 276 YKDFDGVYFEVWKRVAKQKMEFTDALSELYREDMFPLRNVDIKDELRSTRGRFRSMKENY 335

Query: 59  HTCTACITEEVAEDQVLGLIADAVKKLRDKPRFYDDYIKKKINIAQAIGLIT 110
               ACI E V E +   LI DA+ ++  KP+ Y DY + KI IA+ IGLIT
Sbjct: 336 DLYVACIDETVPEKEARQLIKDAIIEMIPKPQTYLDYARNKIKIAEDIGLIT 387



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,488,976
Number of extensions: 117207
Number of successful extensions: 241
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 5
Length of query: 114
Length of database: 17,035,801
Length adjustment: 81
Effective length of query: 33
Effective length of database: 12,806,467
Effective search space: 422613411
Effective search space used: 422613411
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)