Os05g0173500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0173500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.75 | 0.234 | 9.92 | -0.0194 | 0.377 | -1.17 | -0.212 | -0.861 | -0.195 | 11 | 27.85 | 10 | -- | -- |
| 25.65 | 0.238 | 9.94 | -0.169 | 0.384 | -1.13 | 0.0489 | -- | -0.225 | 11.2 | 27.85 | 10 | -- | -- |
| 24.86 | 0.234 | 9.92 | -0.0517 | 0.377 | -1.16 | -- | -0.7 | -0.198 | 11.1 | 27.85 | 10 | -- | -- |
| 25.64 | 0.236 | 9.94 | -0.171 | 0.381 | -1.14 | -- | -- | -0.225 | 11 | 28.25 | 9 | -- | -- |
| 32.22 | 0.266 | 9.94 | -0.112 | -- | -1.42 | -- | -0.733 | -0.244 | -- | 28.33 | 5 | -- | -- |
| 43.98 | 0.311 | 9.88 | 0.0996 | 0.686 | -- | 0.16 | -- | 0.0169 | 12.5 | -- | -- | -- | -- |
| 44.09 | 0.311 | 9.88 | 0.106 | 0.685 | -- | -- | -- | 0.0176 | 12.5 | -- | -- | -- | -- |
| 32.9 | 0.267 | 9.95 | -0.209 | -- | -1.38 | -- | -- | -0.265 | -- | 28.6 | 3 | -- | -- |
| 26.33 | 0.24 | 9.93 | -- | 0.396 | -1.07 | -- | -- | -0.189 | 11.2 | 28.25 | 9 | -- | -- |
| 73.57 | 0.401 | 9.89 | 0.0819 | -- | -- | -- | -- | 0.00609 | -- | -- | -- | -- | -- |
| 44.38 | 0.312 | 9.88 | -- | 0.684 | -- | -- | -- | 0.00587 | 12.5 | -- | -- | -- | -- |
| 34.28 | 0.273 | 9.95 | -- | -- | -1.34 | -- | -- | -0.236 | -- | 28.6 | 3 | -- | -- |
| 73.75 | 0.401 | 9.89 | -- | -- | -- | -- | -- | -0.003 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 2 | 25.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 3 | 25.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 4 | 25.64 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 5 | 25.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 6 | 25.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 8 | 25.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 9 | 25.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 14 | 26.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 19 | 26.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 20 | 26.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 25 | 26.55 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 44 | 26.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 101 | 27.77 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 103 | 27.82 | temperature | 15 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 112 | 27.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 124 | 28.02 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 233 | 28.81 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 244 | 28.87 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 251 | 28.91 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 313 | 29.34 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 404 | 29.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 429 | 29.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 441 | 29.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 466 | 30.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 599 | 30.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 614 | 30.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 678 | 30.57 | temperature | 20 | 10 | > th | dose dependent | sin | 11 | NA |
| 723 | 30.66 | temperature | 25 | 10 | < th | dose dependent | sin | 20 | NA |
| 766 | 30.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 21 |
| 931 | 30.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 14 |
| 957 | 31.00 | temperature | 30 | 10 | < th | dose dependent | sin | 12 | NA |
| 961 | 31.01 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 2 |