BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0966100 Os01g0966100|AK110805
(310 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0966100 Similar to Peroxisomal ABC transporter 635 0.0
Os05g0107600 Similar to Peroxisomal ABC transporter 533 e-152
AK119849 171 6e-43
Os01g0218700 ABC transporter, transmembrane region, type 1 ... 130 1e-30
>Os01g0966100 Similar to Peroxisomal ABC transporter
Length = 310
Score = 635 bits (1639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/310 (100%), Positives = 310/310 (100%)
Query: 1 YALEHKGDRALTSTQGELAHALRFLASVVSQSFIAFGDILELHKKFLELSGGINRVFELE 60
YALEHKGDRALTSTQGELAHALRFLASVVSQSFIAFGDILELHKKFLELSGGINRVFELE
Sbjct: 1 YALEHKGDRALTSTQGELAHALRFLASVVSQSFIAFGDILELHKKFLELSGGINRVFELE 60
Query: 61 ELLQTSQSNAAMPSNPIIAASEEIISFHDVDIVTPSQKLLATQLSCDVSQGKSLLVTGPN 120
ELLQTSQSNAAMPSNPIIAASEEIISFHDVDIVTPSQKLLATQLSCDVSQGKSLLVTGPN
Sbjct: 61 ELLQTSQSNAAMPSNPIIAASEEIISFHDVDIVTPSQKLLATQLSCDVSQGKSLLVTGPN 120
Query: 121 GSGKSSIFRVLRGLWPIASGRLTMPSDGIFHVPQRPYTCLGTLRDQIIYPLSHEEAELKV 180
GSGKSSIFRVLRGLWPIASGRLTMPSDGIFHVPQRPYTCLGTLRDQIIYPLSHEEAELKV
Sbjct: 121 GSGKSSIFRVLRGLWPIASGRLTMPSDGIFHVPQRPYTCLGTLRDQIIYPLSHEEAELKV 180
Query: 181 LSLYKSGDKAITSGSLDDHLKTILENVRLVYLLEREGWDATPNWEDILSLGEQQRLGMAR 240
LSLYKSGDKAITSGSLDDHLKTILENVRLVYLLEREGWDATPNWEDILSLGEQQRLGMAR
Sbjct: 181 LSLYKSGDKAITSGSLDDHLKTILENVRLVYLLEREGWDATPNWEDILSLGEQQRLGMAR 240
Query: 241 LFFHCPKFGILDECTNATSVDVEEHLYKIATSMGITVITSSQRPALIPFHSLELKLIDGE 300
LFFHCPKFGILDECTNATSVDVEEHLYKIATSMGITVITSSQRPALIPFHSLELKLIDGE
Sbjct: 241 LFFHCPKFGILDECTNATSVDVEEHLYKIATSMGITVITSSQRPALIPFHSLELKLIDGE 300
Query: 301 GKWELCTINQ 310
GKWELCTINQ
Sbjct: 301 GKWELCTINQ 310
>Os05g0107600 Similar to Peroxisomal ABC transporter
Length = 1130
Score = 533 bits (1374), Expect = e-152, Method: Compositional matrix adjust.
Identities = 258/310 (83%), Positives = 282/310 (90%), Gaps = 2/310 (0%)
Query: 1 YALEHKGDRALTSTQGELAHALRFLASVVSQSFIAFGDILELHKKFLELSGGINRVFELE 60
YALEHKGDRALTSTQGELAHALRFLASVVSQSFIAFGDIL+LHKKFLELSGGINR+FELE
Sbjct: 823 YALEHKGDRALTSTQGELAHALRFLASVVSQSFIAFGDILDLHKKFLELSGGINRIFELE 882
Query: 61 ELLQTSQSNAAMPSNPIIAASEEIISFHDVDIVTPSQKLLATQLSCDVSQGKSLLVTGPN 120
ELL+ SQ + +PS+ ++EE ISFH+VDIVTPSQKLLA++LSC+V QGKSLL+TGPN
Sbjct: 883 ELLRVSQRDTFVPSDA--TSAEETISFHEVDIVTPSQKLLASKLSCNVVQGKSLLLTGPN 940
Query: 121 GSGKSSIFRVLRGLWPIASGRLTMPSDGIFHVPQRPYTCLGTLRDQIIYPLSHEEAELKV 180
GSGKSSIFRVLR LWP+ SGR+T PSDG+FHVPQRPYT LGTLRDQIIYPLS EEAE+K+
Sbjct: 941 GSGKSSIFRVLRDLWPVCSGRVTKPSDGMFHVPQRPYTSLGTLRDQIIYPLSREEAEMKI 1000
Query: 181 LSLYKSGDKAITSGSLDDHLKTILENVRLVYLLEREGWDATPNWEDILSLGEQQRLGMAR 240
SLY G+ + S LDDHLKTIL NVRLVYLLEREGWD+T NWED+LSLGEQQRLGMAR
Sbjct: 1001 CSLYNDGNGSSASNLLDDHLKTILVNVRLVYLLEREGWDSTSNWEDVLSLGEQQRLGMAR 1060
Query: 241 LFFHCPKFGILDECTNATSVDVEEHLYKIATSMGITVITSSQRPALIPFHSLELKLIDGE 300
LFFH PKFGILDECTNATSVDVEEHLYK+ATSMGITVITSSQRPALIPFHSLELKLIDGE
Sbjct: 1061 LFFHHPKFGILDECTNATSVDVEEHLYKLATSMGITVITSSQRPALIPFHSLELKLIDGE 1120
Query: 301 GKWELCTINQ 310
G WELC I+Q
Sbjct: 1121 GNWELCEIHQ 1130
Score = 231 bits (588), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 138/308 (44%), Positives = 187/308 (60%), Gaps = 33/308 (10%)
Query: 12 TSTQGELAHALRFLASVVSQSFIAFGDILELHKKFLE-LSGGINRVFELEELLQ------ 64
T + E+ LR+ SV+ F + G IL + + L LSG +R+ EL ++ +
Sbjct: 179 TLGRAEMLSNLRYHTSVIISLFQSLG-ILSISTRRLNILSGYADRIRELLDVSRELSGVR 237
Query: 65 -TSQSNAAMPSNPIIAASEEIISFHDVDIVTPSQKLLATQLSCDVSQGKSLLVTGPNGSG 123
S ++ + N I A+ I F V +VTP+ +L L+ V +G +LL+TGPNGSG
Sbjct: 238 DKSLNHNSSAGNYISEANH--IEFSGVKVVTPASNVLVDDLTLRVERGSNLLITGPNGSG 295
Query: 124 KSSIFRVLRGLWPIASGRLTMPSDG------IFHVPQRPYTCLGTLRDQIIYPLSHEEAE 177
KSS+FRVL GLWP+ SG + P G IF+VPQRPYT +GTLR+Q+IYPL+ ++ E
Sbjct: 296 KSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYTAVGTLREQLIYPLTADQ-E 354
Query: 178 LKVLSLYKSGDKAITSGSLDDHLKTILENVRLVYLLEREGWDATPNWEDILSLGEQQRLG 237
++ LS D + +L+NV L YLLER D NW D LSLGEQQRLG
Sbjct: 355 IEPLSY--------------DGMVDLLKNVDLEYLLERYPLDKEVNWGDELSLGEQQRLG 400
Query: 238 MARLFFHCPKFGILDECTNATSVDVEEHLYKIATSMGITVITSSQRPALIPFHSLELKLI 297
MARLF+H PKF ILDECT+A ++D+EE K +MG + IT S RPAL+ FH + L L
Sbjct: 401 MARLFYHKPKFAILDECTSAVTIDMEERFCKKVRAMGTSCITISHRPALVAFHDIVLSL- 459
Query: 298 DGEGKWEL 305
DGEG W++
Sbjct: 460 DGEGGWDV 467
>AK119849
Length = 842
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 156/300 (52%), Gaps = 39/300 (13%)
Query: 35 AFGDILELHKKFLELSGGINRVFELEELLQTSQSNAAMP---SNPIIAASEEI------- 84
A G ++ K EL+G +RV+ L L ++A P + P + + ++
Sbjct: 465 AGGRMMYSIKDLSELAGYTSRVYTLISTLHRVHADAYYPPPGTRPELYSVSDVQGTVHKG 524
Query: 85 ---ISFHDVDIVTPSQKLLA-----TQLSCDVSQGKSLLVTGPNGSGKSSIFRVLRGLWP 136
I V IV P+ + LS V G+ LL+TGPNG GKS++ R++ GLWP
Sbjct: 525 FDGIRLEHVPIVAPALHPMGGDDLLESLSFIVHSGEHLLITGPNGVGKSAVARIVAGLWP 584
Query: 137 IASGRLTMPS----DGIFHVPQRPYTCLGTLRDQIIYPLSHEEAELKVLSLYKSGDKAIT 192
G ++ P DGI +PQRPY GTLRDQ+IYP H ++K
Sbjct: 585 TYRGLVSRPRSNGVDGIMFLPQRPYLSTGTLRDQVIYP--HTAVDMK------------D 630
Query: 193 SGSLDDHLKTILENVRLVYLLEREG-WDATPNWEDILSLGEQQRLGMARLFFHCPKFGIL 251
+G D L ILE +L Y+ +REG WD W+D+ S GE+QR+G+ARL +H P++ +
Sbjct: 631 AGRRDFELSQILEEAKLGYIPDREGGWDTKKVWKDVFSGGEKQRMGIARLLYHEPRYAFV 690
Query: 252 DECTNATSVDVEEHLYKIATSMGITVITSSQRPALIPFHSLELKLIDGE--GKWELCTIN 309
DE T+A S DVE LY+ + GIT+IT S R +L +H L L GE +WE I
Sbjct: 691 DEGTSAVSSDVEGLLYERCKAKGITLITISTRASLKRYHDYTLTLGLGEHSDEWEFQRIG 750
>Os01g0218700 ABC transporter, transmembrane region, type 1 domain containing
protein
Length = 771
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 149/341 (43%), Gaps = 77/341 (22%)
Query: 28 VVSQSFIAFGDILE-------LHKKFLELSGGINRVFELEELLQTSQSNAAMPSN----- 75
V++QS AF IL + S I+R+ E ++LL + S+ + P N
Sbjct: 395 VINQSVSAFNHILSDFSLIVFQFQSISAFSAVIDRLGEFDDLLDGNGSSLSKPDNIDGIN 454
Query: 76 ----------------PIIAASEEIISFHDVDIVTP-SQKLLATQLSCDVSQGKSLLVTG 118
P + ++ ++ ++TP S +L T L+ ++ + LLV G
Sbjct: 455 IIFKSTGPTVLSSNGSPTQSNPSMVLEICNLTLLTPRSGNILITDLTMELKEKDHLLVMG 514
Query: 119 PNGSGKSSIFRVLRGLWPIASGRLTM-----------------PSD-------------- 147
P+GSGK+S+ R L GLW +G + PS+
Sbjct: 515 PSGSGKTSLLRALAGLWTSGTGDIIYHVRGSMELQTSNSGPDEPSNIQSNGEELLQSSKQ 574
Query: 148 ----GIFHVPQRPYTCLGTLRDQIIYPLSHEEA---------ELKVLSLYKSGDKAITSG 194
GIF VPQRPY LGTLR Q++YP E+ L+ S + S
Sbjct: 575 RRDNGIFFVPQRPYMVLGTLRQQLLYPTWTEDVCHSSNNDPQSTDPLTFEVSTSDGVGSK 634
Query: 195 S---LDDHLKTILENVRLVYLLER-EGWDATPNWEDILSLGEQQRLGMARLFFHCPKFGI 250
S D L +LE V+L Y+L R G D+ +W +LSLGEQQRL ARL P +
Sbjct: 635 SEMPTTDELIRVLEAVKLGYILPRFNGLDSMHDWASVLSLGEQQRLAFARLLLAKPTLVL 694
Query: 251 LDECTNATSVDVEEHLYKIATSMGITVITSSQRPALIPFHS 291
LDE T+A E HLY + GIT I+ R L FH+
Sbjct: 695 LDESTSALDDMNERHLYSQIEAAGITYISIGHRKTLHKFHN 735
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,101,153
Number of extensions: 394529
Number of successful extensions: 1322
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1313
Number of HSP's successfully gapped: 5
Length of query: 310
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 209
Effective length of database: 11,762,187
Effective search space: 2458297083
Effective search space used: 2458297083
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)