Os01g0966100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxisomal ABC transporter.
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Os01g0966100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxisomal ABC transporter.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.49 | 0.223 | 12 | 0.876 | 0.306 | -0.86 | 0.219 | 0.717 | 0.423 | 9.3 | 17.01 | 712 | -- | -- |
| 23.06 | 0.224 | 12 | 0.791 | 0.308 | -0.809 | 0.0175 | -- | 0.399 | 9.32 | 16.4 | 701 | -- | -- |
| 22.56 | 0.221 | 12 | 0.862 | 0.301 | -0.855 | -- | 0.63 | 0.424 | 9.87 | 17.76 | 636 | -- | -- |
| 22.87 | 0.223 | 12 | 0.747 | 0.298 | -0.855 | -- | -- | 0.377 | 9.67 | 16.53 | 660 | -- | -- |
| 26.93 | 0.242 | 12 | 0.905 | -- | -1.03 | -- | 0.654 | 0.456 | -- | 18.21 | 702 | -- | -- |
| 33.85 | 0.273 | 12.1 | 0.505 | 0.529 | -- | 0.171 | -- | 0.24 | 8.91 | -- | -- | -- | -- |
| 33.95 | 0.273 | 12.1 | 0.511 | 0.529 | -- | -- | -- | 0.24 | 8.9 | -- | -- | -- | -- |
| 27.21 | 0.243 | 12 | 0.797 | -- | -1.08 | -- | -- | 0.424 | -- | 16.96 | 692 | -- | -- |
| 35.47 | 0.277 | 12.1 | -- | 0.381 | -0.495 | -- | -- | 0.255 | 8.83 | 19.3 | 701 | -- | -- |
| 49.92 | 0.33 | 12.1 | 0.51 | -- | -- | -- | -- | 0.244 | -- | -- | -- | -- | -- |
| 40.82 | 0.299 | 12.1 | -- | 0.53 | -- | -- | -- | 0.183 | 8.83 | -- | -- | -- | -- |
| 41.86 | 0.301 | 12.1 | -- | -- | -0.734 | -- | -- | 0.295 | -- | 20.6 | 668 | -- | -- |
| 56.79 | 0.352 | 12.1 | -- | -- | -- | -- | -- | 0.187 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.74 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 3 | 21.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 6 | 21.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 10 | 21.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 14 | 21.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 40 | 21.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 49 | 22.01 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 52 | 22.01 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 168 | 22.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 287 | 22.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 367 | 22.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 471 | 22.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 514 | 22.75 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 515 | 22.75 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 527 | 22.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 770 | 22.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 774 | 22.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 867 | 22.92 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |