BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0964000 Os01g0964000|AK073599
         (214 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0964000  Similar to VAMP-like protein YKT61 (AtYKT61) (...   387   e-108
Os01g0866300  Similar to VAMP-like protein YKT61 (AtYKT61) (...   301   2e-82
Os06g0174400  Similar to Vesicle-associated membrane protein...    65   5e-11

>Os01g0964000 Similar to VAMP-like protein YKT61 (AtYKT61) (Geranylgeranylated
           protein 1) (AtGP1)
          Length = 214

 Score =  387 bits (994), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/214 (88%), Positives = 189/214 (88%)

Query: 1   MKITALLVLKSPXXXXXXXXXXXXXXXXXXXXXXXXXNATDVSHFGYFQRNPAREFILFV 60
           MKITALLVLKSP                         NATDVSHFGYFQRNPAREFILFV
Sbjct: 1   MKITALLVLKSPGDGDSSSGGGGGEQEQEQQAAVVVANATDVSHFGYFQRNPAREFILFV 60

Query: 61  ARTVAARTPAGRRQSVQHEEYKVHCYNQNGLCAIAFTDDHYPVRSAFSLLNTVLEEYHKT 120
           ARTVAARTPAGRRQSVQHEEYKVHCYNQNGLCAIAFTDDHYPVRSAFSLLNTVLEEYHKT
Sbjct: 61  ARTVAARTPAGRRQSVQHEEYKVHCYNQNGLCAIAFTDDHYPVRSAFSLLNTVLEEYHKT 120

Query: 121 FGERWRTAKTDNTQPWQYLDDALTKYQDPAEADKLLKIQRDLDETKIILHKTIDSVLSRG 180
           FGERWRTAKTDNTQPWQYLDDALTKYQDPAEADKLLKIQRDLDETKIILHKTIDSVLSRG
Sbjct: 121 FGERWRTAKTDNTQPWQYLDDALTKYQDPAEADKLLKIQRDLDETKIILHKTIDSVLSRG 180

Query: 181 ERLDSLVEKSSDLSAASQMFYKQAKKTNSCCTIL 214
           ERLDSLVEKSSDLSAASQMFYKQAKKTNSCCTIL
Sbjct: 181 ERLDSLVEKSSDLSAASQMFYKQAKKTNSCCTIL 214



>Os01g0866300 Similar to VAMP-like protein YKT61 (AtYKT61) (Geranylgeranylated
           protein 1) (AtGP1)
          Length = 251

 Score =  301 bits (772), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 154/217 (70%), Positives = 166/217 (76%), Gaps = 4/217 (1%)

Query: 1   MKITALLVLKSPXXXXXXXXXXXXXXXXXXXXXXXXXNATDVSHFGYFQRNPAREFILFV 60
           MKITALLVLK P                         NATDVSHFG+FQR  AREFI+FV
Sbjct: 36  MKITALLVLK-PSSSGGGASSSGGGGGSGGPEAVVLANATDVSHFGFFQRGAAREFIVFV 94

Query: 61  ARTVAARTPAGRRQSVQHEEYKVHCYNQNGLCAIAFTDDHYPVRSAFSLLNTVLEEYHKT 120
           ARTVA RT  G+RQSVQHEEYKVH +N+NGLCA+AF DDHYPVRSAFSLLN VL+EY K 
Sbjct: 95  ARTVAQRTQPGQRQSVQHEEYKVHSHNRNGLCAVAFMDDHYPVRSAFSLLNKVLDEYQKA 154

Query: 121 FGERW---RTAKTDNTQPWQYLDDALTKYQDPAEADKLLKIQRDLDETKIILHKTIDSVL 177
           FG+ W       TD  Q W +L DALTK+QDPAEADKL+KIQRDLDETKIILHKTI+SVL
Sbjct: 155 FGDSWKAATKDATDAAQQWPFLTDALTKFQDPAEADKLMKIQRDLDETKIILHKTIESVL 214

Query: 178 SRGERLDSLVEKSSDLSAASQMFYKQAKKTNSCCTIL 214
            RGERLDSLVEKSSDLSAASQMFYKQAKKTN CCTIL
Sbjct: 215 QRGERLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 251



>Os06g0174400 Similar to Vesicle-associated membrane protein 712 (AtVAMP712)
          Length = 221

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 5/150 (3%)

Query: 62  RTVAARTPAG---RRQSVQHEEYKVHCYNQNGLCAIAFTDDHYPVRSAFSLLNTVLEEYH 118
           R V  R P G      S   + Y  H    +G+ A+   D+    R  F+ L  +   + 
Sbjct: 30  RQVLERLPGGGADSHVSYTQDRYVFHAKRTDGITALCMADEAAGRRIPFAFLEDIHGRFV 89

Query: 119 KTFGERWRT--AKTDNTQPWQYLDDALTKYQDPAEADKLLKIQRDLDETKIILHKTIDSV 176
           KT+G    T  A   N +  + L   +  Y +   AD++ +++ ++ + + ++   ID V
Sbjct: 90  KTYGRAALTSLAYGMNDEFSRVLSQQMDYYSNDPNADRINRMRGEISQVRTVMIDNIDKV 149

Query: 177 LSRGERLDSLVEKSSDLSAASQMFYKQAKK 206
           L RG+RLD LV+K++++   +  F +QA++
Sbjct: 150 LERGDRLDMLVDKTANMQGNTIRFKRQARR 179



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,802,329
Number of extensions: 216480
Number of successful extensions: 514
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 511
Number of HSP's successfully gapped: 3
Length of query: 214
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 117
Effective length of database: 11,971,043
Effective search space: 1400612031
Effective search space used: 1400612031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)