Os01g0964000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to VAMP-like protein YKT61 (AtYKT61) (Geranylgeranylated protein 1) (AtGP1).
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Os01g0964000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to VAMP-like protein YKT61 (AtYKT61) (Geranylgeranylated protein 1) (AtGP1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.36 | 0.279 | 10.3 | 0.593 | 0.717 | -0.969 | 0.424 | 0.27 | 0.00797 | 11.4 | 20.74 | 3840 | -- | -- |
| 35.4 | 0.277 | 10.3 | 0.53 | 0.717 | -0.971 | 0.407 | -- | -0.00939 | 11.4 | 20.42 | 3823 | -- | -- |
| 36.12 | 0.28 | 10.3 | 0.582 | 0.715 | -0.968 | -- | 0.168 | -0.000848 | 11.3 | 20.76 | 3825 | -- | -- |
| 36.13 | 0.28 | 10.3 | 0.541 | 0.716 | -0.972 | -- | -- | -0.00937 | 11.3 | 20.52 | 3838 | -- | -- |
| 63.43 | 0.371 | 10.3 | 0.735 | -- | -1.16 | -- | 0.828 | 0.072 | -- | 22.52 | 2380 | -- | -- |
| 59.88 | 0.363 | 10.3 | 0.114 | 0.818 | -- | 0.489 | -- | -0.206 | 11.5 | -- | -- | -- | -- |
| 60.91 | 0.365 | 10.3 | 0.134 | 0.816 | -- | -- | -- | -0.204 | 11.5 | -- | -- | -- | -- |
| 58.05 | 0.355 | 10.3 | 0.601 | -- | -1.31 | -- | -- | 0.113 | -- | 20.6 | 958 | -- | -- |
| 41.26 | 0.299 | 10.3 | -- | 0.695 | -0.755 | -- | -- | -0.0821 | 11.3 | 21.83 | 2470 | -- | -- |
| 102.67 | 0.473 | 10.3 | 0.112 | -- | -- | -- | -- | -0.213 | -- | -- | -- | -- | -- |
| 61.38 | 0.366 | 10.3 | -- | 0.814 | -- | -- | -- | -0.219 | 11.4 | -- | -- | -- | -- |
| 62.88 | 0.369 | 10.3 | -- | -- | -1.13 | -- | -- | -0.0503 | -- | 21.8 | 938 | -- | -- |
| 103 | 0.474 | 10.3 | -- | -- | -- | -- | -- | -0.225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.35 | radiation | 1 | 14400 | < th | dose dependent | sin | 0 | NA |
| 4 | 35.38 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 14 |
| 12 | 35.43 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 16 | 35.43 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 23 |
| 21 | 35.47 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 36 | 35.49 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 23 |
| 50 | 35.51 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 20 |
| 73 | 35.53 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 87 | 35.54 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 23 |
| 94 | 35.55 | radiation | 1 | 14400 | < th | dose dependent | rect. | 13 | 23 |
| 95 | 35.56 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 11 |
| 97 | 35.56 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 12 |
| 127 | 35.61 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 174 | 35.66 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 175 | 35.66 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 212 | 35.70 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 292 | 35.78 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 308 | 35.79 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 9 |
| 313 | 35.80 | radiation | 1 | 14400 | < th | dose dependent | sin | 11 | NA |
| 334 | 35.83 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 18 |
| 344 | 35.84 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 15 |
| 363 | 35.85 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 12 |
| 394 | 35.86 | radiation | 1 | 14400 | > th | dose independent | sin | 20 | NA |
| 438 | 35.93 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 16 |
| 454 | 35.94 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 13 |
| 548 | 36.05 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 555 | 36.06 | radiation | 1 | 14400 | < th | dose independent | sin | 21 | NA |
| 568 | 36.06 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 17 |
| 644 | 36.13 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 20 |
| 652 | 36.14 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 18 |
| 669 | 36.15 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 681 | 36.16 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 22 |
| 687 | 36.17 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 744 | 36.21 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 774 | 36.21 | temperature | 20 | 4320 | > th | dose dependent | sin | 16 | NA |
| 787 | 36.22 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 840 | 36.26 | temperature | 20 | 4320 | > th | dose dependent | rect. | 14 | 10 |
| 841 | 36.26 | temperature | 20 | 4320 | > th | dose dependent | rect. | 14 | 13 |
| 889 | 36.31 | temperature | 20 | 4320 | > th | dose dependent | sin | 7 | NA |
| 935 | 36.35 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 942 | 36.35 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 12 |
| 987 | 36.39 | humidity | 90 | 43200 | < th | dose independent | sin | 17 | NA |
| 990 | 36.39 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 17 |