BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0964000 Os01g0964000|AK073599
(214 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G58060.2 | chr5:23498277-23500128 FORWARD LENGTH=222 293 3e-80
AT5G58180.1 | chr5:23544011-23545157 FORWARD LENGTH=200 266 5e-72
AT2G25340.1 | chr2:10792664-10793832 REVERSE LENGTH=220 66 1e-11
AT4G32150.1 | chr4:15526407-15527651 REVERSE LENGTH=220 65 3e-11
AT5G11150.1 | chr5:3546625-3547844 REVERSE LENGTH=222 62 2e-10
AT1G11890.1 | chr1:4011509-4012835 FORWARD LENGTH=219 58 5e-09
AT5G22360.1 | chr5:7404379-7405654 REVERSE LENGTH=222 53 1e-07
AT1G04760.1 | chr1:1334760-1336070 FORWARD LENGTH=221 49 2e-06
AT2G32670.1 | chr2:13857941-13859346 FORWARD LENGTH=286 49 2e-06
AT2G33120.2 | chr2:14043785-14045337 REVERSE LENGTH=230 48 4e-06
>AT5G58060.2 | chr5:23498277-23500128 FORWARD LENGTH=222
Length = 221
Score = 293 bits (751), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 149/236 (63%), Positives = 167/236 (70%), Gaps = 37/236 (15%)
Query: 1 MKITALLVLKSPXXXXXXXXXXXXXXXXXXXXXXXXXNATDVSHFGYFQRNPAREFILFV 60
MKITALLVLK NA+DVSHFGYFQR+ +EF++FV
Sbjct: 1 MKITALLVLKC---------------APEASDPVILSNASDVSHFGYFQRSSVKEFVVFV 45
Query: 61 ARTVAARTPAGRRQSVQHEEYK----------------------VHCYNQNGLCAIAFTD 98
RTVA+RTP +RQSVQHE VH YN+NGLCA+ F D
Sbjct: 46 GRTVASRTPPSQRQSVQHEGCAPFLILDLPGLCPGFNFLRFYLIVHAYNRNGLCAVGFMD 105
Query: 99 DHYPVRSAFSLLNTVLEEYHKTFGERWRTAKTDNTQPWQYLDDALTKYQDPAEADKLLKI 158
DHYPVRSAFSLLN VL+EY K+FGE WR+AK D+ QPW YL +AL K+QDPAEADKLLKI
Sbjct: 106 DHYPVRSAFSLLNQVLDEYQKSFGESWRSAKEDSNQPWPYLTEALNKFQDPAEADKLLKI 165
Query: 159 QRDLDETKIILHKTIDSVLSRGERLDSLVEKSSDLSAASQMFYKQAKKTNSCCTIL 214
QR+LDETKIILHKTIDSVL+RGE+LDSLVEKSSDLS ASQMFYKQAKKTNSCCTIL
Sbjct: 166 QRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSMASQMFYKQAKKTNSCCTIL 221
>AT5G58180.1 | chr5:23544011-23545157 FORWARD LENGTH=200
Length = 199
Score = 266 bits (681), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 136/216 (62%), Positives = 159/216 (73%), Gaps = 19/216 (8%)
Query: 1 MKITALLVLKSPXXXXXXXXXXXXXXXXXXXXXXXXXNATDVSHFGYFQ--RNPAREFIL 58
MKITALLVLK N +D+S FG F R+ EFI+
Sbjct: 1 MKITALLVLKC---------------DPETREPVILANVSDLSQFGKFSFYRSNFEEFIV 45
Query: 59 FVARTVAARTPAGRRQSVQHEEYKVHCYNQNGLCAIAFTDDHYPVRSAFSLLNTVLEEYH 118
F+ARTVA RTP G+RQSV+HEEYKVH YN NGLCA+ F DDHYPVRSAFSLLN VL+ Y
Sbjct: 46 FIARTVARRTPPGQRQSVKHEEYKVHAYNINGLCAVGFMDDHYPVRSAFSLLNQVLDVYQ 105
Query: 119 KTFGERWRTAKTDNTQPWQYLDDALTKYQDPAEADKLLKIQRDLDETKIILHKTIDSVLS 178
K +G+ WR +++QPW YL +A K++DPAEADKLLKIQR+LDETKIILHKTID VL+
Sbjct: 106 KDYGDTWRFE--NSSQPWPYLKEASDKFRDPAEADKLLKIQRELDETKIILHKTIDGVLA 163
Query: 179 RGERLDSLVEKSSDLSAASQMFYKQAKKTNSCCTIL 214
RGE+LDSLVEKSS+LS AS+MFYKQAKKTNSCCT+L
Sbjct: 164 RGEKLDSLVEKSSELSLASKMFYKQAKKTNSCCTLL 199
>AT2G25340.1 | chr2:10792664-10793832 REVERSE LENGTH=220
Length = 219
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
Query: 60 VARTVAARTPAGRRQSVQHEE--YKVHCYNQNGLCAIAFTDDHYPVRSAFSLLNTVLEEY 117
+A+ + + P V + + Y H +GL + D+ R FS L + + +
Sbjct: 28 IAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRF 87
Query: 118 HKTFGERWRTAKT--DNTQPWQYLDDALTKYQDPAEADKLLKIQRDLDETKIILHKTIDS 175
+T+G +A+ N + + L+ + Y + AD + +I+ ++++ + ++ + ID+
Sbjct: 88 VRTYGRAIHSAQAYAMNDEFSRVLNQQIEYYSNDPNADTISRIKGEMNQVRDVMIENIDN 147
Query: 176 VLSRGERLDSLVEKSSDLSAASQMFYKQAKKTNS 209
+L RGERL+ LV+K++++ + F KQ ++ N+
Sbjct: 148 ILDRGERLELLVDKTANMQGNTFRFRKQTRRFNN 181
>AT4G32150.1 | chr4:15526407-15527651 REVERSE LENGTH=220
Length = 219
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 60 VARTVAARTPAGRRQSVQHEE--YKVHCYNQNGLCAIAFTDDHYPVRSAFSLLNTVLEEY 117
+A+ + + P +V + + Y H +GL + ++ R F+ L + + +
Sbjct: 28 IAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRF 87
Query: 118 HKTFGERWRTA--KTDNTQPWQYLDDALTKYQDPAEADKLLKIQRDLDETKIILHKTIDS 175
+T+G TA N + + L + Y + AD++ +I+ ++++ + ++ + ID
Sbjct: 88 VRTYGRAVHTALAYAMNEEFSRVLSQQIDYYSNDPNADRINRIKGEMNQVRGVMIENIDK 147
Query: 176 VLSRGERLDSLVEKSSDLSAASQMFYKQAKKTNS 209
VL RGERL+ LV+K++++ + F KQA++ S
Sbjct: 148 VLDRGERLELLVDKTANMQGNTFRFRKQARRFRS 181
>AT5G11150.1 | chr5:3546625-3547844 REVERSE LENGTH=222
Length = 221
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Query: 75 SVQHEEYKVHCYNQNGLCAIAFTDDHYPVRSAFSLLNTVLEEYHKTFGERWRTAK--TDN 132
S + Y H +GL + D+ F+ L+ + + + KT+G +A+ + N
Sbjct: 46 SYSQDRYIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRAIHSAQAYSMN 105
Query: 133 TQPWQYLDDALTKYQDPAEADKLLKIQRDLDETKIILHKTIDSVLSRGERLDSLVEKSSD 192
+ + L + Y + AD++ +I+ ++ + + ++ + ID VL RGERL+ LV+K+ +
Sbjct: 106 DEFSRVLSQQMEFYSNDPNADRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTEN 165
Query: 193 LSAASQMFYKQAKK 206
+ + F KQA++
Sbjct: 166 MQGNTFRFRKQARR 179
>AT1G11890.1 | chr1:4011509-4012835 FORWARD LENGTH=219
Length = 218
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 10/147 (6%)
Query: 73 RQSVQHEEYKVHCYNQNGLCAIAFTDDHYPVRSAFSLLNTVLEEYHKTFGERWRTAKTDN 132
R SV+ Y H + +C + D YP + AF L + E+ + G TA
Sbjct: 52 RMSVETGPYVFHYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGPNIETA---- 107
Query: 133 TQPWQYL--DDALTK----YQDPAEADKLLKIQRDLDETKIILHKTIDSVLSRGERLDSL 186
+P+ ++ D + K YQD + K+ +L E I+ + + VL GE+LD +
Sbjct: 108 ARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQV 167
Query: 187 VEKSSDLSAASQMFYKQAKKTNSCCTI 213
E SS L++ S+++ +AK N I
Sbjct: 168 SEMSSRLTSESRIYADKAKDLNRQALI 194
>AT5G22360.1 | chr5:7404379-7405654 REVERSE LENGTH=222
Length = 221
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 14/142 (9%)
Query: 73 RQSVQHEEYKVHCYNQNGLCAIAFTDDHYPVRSAFSLLNTVLEEYHKTFGERWRTAKTDN 132
R + Y H +GL + +D + R FS L EE H F + + K +
Sbjct: 44 RLCFSQDRYIFHILRSDGLTFLCMANDTFGRRVPFSYL----EEIHMRFMKNY--GKVAH 97
Query: 133 TQPWQYLDDALTK--------YQDPAEADKLLKIQRDLDETKIILHKTIDSVLSRGERLD 184
P ++D ++ + D L +++ ++ E + ++ + I+ ++ RG+R++
Sbjct: 98 NAPAYAMNDEFSRVLHQQMEFFSSNPSVDTLNRVRGEVSEIRSVMVENIEKIMERGDRIE 157
Query: 185 SLVEKSSDLSAASQMFYKQAKK 206
LV+K++ + +S F KQ+K+
Sbjct: 158 LLVDKTATMQDSSFHFRKQSKR 179
>AT1G04760.1 | chr1:1334760-1336070 FORWARD LENGTH=221
Length = 220
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 84 HCYN---QNGL--CAIAFTDDHYPVRSAFSLLNTVLEEYHKTFGE-RWRTAKTD--NTQP 135
H +N NG C + + AF L V E+++K +G + TAK + N +
Sbjct: 53 HTFNYLADNGFTYCVVVIESAGRQIPMAF--LERVKEDFNKRYGGGKASTAKANSLNKEF 110
Query: 136 WQYLDDALTKYQD-PAEADKLLKIQRDLDETKIILHKTIDSVLSRGERLDSLVEKSSDLS 194
L + + D P E KL K++ + E K ++ + I+ VL RGE+++ LV+K+ +L
Sbjct: 111 GSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLR 170
Query: 195 AASQMFYKQAKK 206
+ +Q F Q K
Sbjct: 171 SQAQDFRTQGTK 182
>AT2G32670.1 | chr2:13857941-13859346 FORWARD LENGTH=286
Length = 285
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 84 HCYN---QNGL--CAIAFTDDHYPVRSAFSLLNTVLEEYHKTFGERWRTAKTDNTQPWQY 138
H +N +NG C +A + AF L V E+++K +G T N+ ++
Sbjct: 118 HTFNYLVENGFTYCVVAVESVGRQIPMAF--LERVKEDFNKRYGGGKATTAQANSLNREF 175
Query: 139 ---LDDALTKYQD-PAEADKLLKIQRDLDETKIILHKTIDSVLSRGERLDSLVEKSSDLS 194
L + + D P E KL K++ + E K ++ + I+ VL RGE+++ LV+K+ +L
Sbjct: 176 GSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLR 235
Query: 195 AASQMFYKQAKK 206
+ +Q F Q K
Sbjct: 236 SQAQDFRTQGTK 247
>AT2G33120.2 | chr2:14043785-14045337 REVERSE LENGTH=230
Length = 229
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 92 CAIAFTDDHYPVRSAFSLLNTVLEEYHKTFGE-RWRTAKTD--NTQPWQYLDDALTKYQD 148
C +A + AF L V E+++K +G + TA+ + N + L + + D
Sbjct: 74 CVVAVDSAGRQIPMAF--LERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMD 131
Query: 149 -PAEADKLLKIQRDLDETKIILHKTIDSVLSRGERLDSLVEKSSDLSAASQMFYKQA 204
P E KL K++ + E K ++ + I+ VL RGE+++ LV+K+ +L + +Q F Q
Sbjct: 132 HPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQG 188
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,811,157
Number of extensions: 142915
Number of successful extensions: 397
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 10
Length of query: 214
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 120
Effective length of database: 8,529,465
Effective search space: 1023535800
Effective search space used: 1023535800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)