BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0961600 Os01g0961600|AK071901
(412 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0961600 Conserved hypothetical protein 837 0.0
Os01g0967800 Conserved hypothetical protein 169 2e-42
Os01g0956500 Conserved hypothetical protein 141 7e-34
Os05g0173500 Conserved hypothetical protein 135 4e-32
Os01g0970200 110 3e-24
>Os01g0961600 Conserved hypothetical protein
Length = 412
Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/412 (97%), Positives = 401/412 (97%)
Query: 1 MEGMLXXXXXXXXXXXNGTNMWTGQKDKLALDPCVSGDTNENAHACTSLTAVHQVLEEST 60
MEGML NGTNMWTGQKDKLALDPCVSGDTNENAHACTSLTAVHQVLEEST
Sbjct: 1 MEGMLPSDPPGSDDDGNGTNMWTGQKDKLALDPCVSGDTNENAHACTSLTAVHQVLEEST 60
Query: 61 NNTVHAMDMGVVTRQDDPLKASEEDINQHKDEQELWGPNVQTSQDDYFDYVKQLSPNSRR 120
NNTVHAMDMGVVTRQDDPLKASEEDINQHKDEQELWGPNVQTSQDDYFDYVKQLSPNSRR
Sbjct: 61 NNTVHAMDMGVVTRQDDPLKASEEDINQHKDEQELWGPNVQTSQDDYFDYVKQLSPNSRR 120
Query: 121 IDKWSLLSHDEMIEVKERHARYRIRFCKMLNKEFEDTMKDPAEYSRGELLKENYFLRYER 180
IDKWSLLSHDEMIEVKERHARYRIRFCKMLNKEFEDTMKDPAEYSRGELLKENYFLRYER
Sbjct: 121 IDKWSLLSHDEMIEVKERHARYRIRFCKMLNKEFEDTMKDPAEYSRGELLKENYFLRYER 180
Query: 181 DETLGWYFHPVHTWLAGLNDYQKLVLVNHDDSTEFLARDDYHSCFNTYEVDEDYVKYCEE 240
DETLGWYFHPVHTWLAGLNDYQKLVLVNHDDSTEFLARDDYHSCFNTYEVDEDYVKYCEE
Sbjct: 181 DETLGWYFHPVHTWLAGLNDYQKLVLVNHDDSTEFLARDDYHSCFNTYEVDEDYVKYCEE 240
Query: 241 LPKKIKWIGDYVDLDRSSQEWSKMDNTTFFQALKIATNFCHMTVGLAQFAYMEYVWDLRE 300
LPKKIKWIGDYVDLDRSSQEWSKMDNTTFFQALKIATNFCHMTVGLAQFAYMEYVWDLRE
Sbjct: 241 LPKKIKWIGDYVDLDRSSQEWSKMDNTTFFQALKIATNFCHMTVGLAQFAYMEYVWDLRE 300
Query: 301 ISRLKEWPYFLHEIWKLVAKQKMNFNDALKVVYEMDMFHSFKFAVEAELNGDKLFGLEYR 360
ISRLKEWPYFLHEIWKLVAKQKMNFNDALKVVYEMDMFHSFKFAVEAELNGDKLFGLEYR
Sbjct: 301 ISRLKEWPYFLHEIWKLVAKQKMNFNDALKVVYEMDMFHSFKFAVEAELNGDKLFGLEYR 360
Query: 361 FSMCSKDISGDVEEGKALDLITKAVYREFHHTQTMCGYAAKKMDMAKKIGLV 412
FSMCSKDISGDVEEGKALDLITKAVYREFHHTQTMCGYAAKKMDMAKKIGLV
Sbjct: 361 FSMCSKDISGDVEEGKALDLITKAVYREFHHTQTMCGYAAKKMDMAKKIGLV 412
>Os01g0967800 Conserved hypothetical protein
Length = 550
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 125/391 (31%), Positives = 210/391 (53%), Gaps = 25/391 (6%)
Query: 33 PCVSGDTNENAHACTSLTAVHQVLEESTNNTVHAMDMGVVTRQDDPLKASEEDINQHKDE 92
PC T +++ T+ + E +TN A + V +++ L+ ++E I K
Sbjct: 166 PCQKPTTAPSSNGNTAPPKDRK--EPATN----AENNAVPVAENNDLQEADEAI---KRL 216
Query: 93 QEL-WGPNVQTSQDDYFDYVKQLSPNSRRIDKWSLLSHDEMIEVKERHARYRIRFCKMLN 151
EL G N+ S +++ Y+ QL+ + ID L ++ + +HARYR+R+ K L+
Sbjct: 217 NELGLGENI--SSEEFLTYIDQLNEQPK-IDTSIELDDAQVTTLYFQHARYRVRYYKHLS 273
Query: 152 KE-----FEDT--MKDPAEYSRG-ELLKE-NYFLRYERDETLGWYFHPVHTWLAGLNDYQ 202
++ ED+ MK E E ++E +F+R+E D T WYF+P + WLA LNDYQ
Sbjct: 274 QQPNTELVEDSYHMKLVGEDELSDEFIREMEFFMRFEEDGTFDWYFYPDYCWLAALNDYQ 333
Query: 203 KLVLVNHDDSTEFLARDDYHSCFNTYEVDEDYVKYCEELPKKIKWIGDYVDLDRSSQEWS 262
+LV +N E+ DDY FN+Y + Y+ +C+ L K++KW+ DYV S +W
Sbjct: 334 RLVPINCV-GEEYAYWDDYRGYFNSYHTELQYLDFCKALSKELKWMEDYVLNKLPSSKWG 392
Query: 263 KMDNTTFFQALKIATNFCHMTVGLAQFAYMEYVWDLR-EISRLKEWPYFLHEIWKLVAKQ 321
++ + +QA+KIAT F +T LA AY + + +R ++ K+ EIW+ V Q
Sbjct: 393 RICSRGAYQAIKIATRFSKITAALAYNAYYDCLQHMRFYVAYCKDMDSLYFEIWQRVNMQ 452
Query: 322 KMNFNDALKVVYEMDMFHSFKFAVEAELNGDKLFGLEYRFSMCSKDISGDVEEGKALDLI 381
K +F D+L+ VY ++ F S + ++ L + +E F +C+ ++ ++ E KAL+LI
Sbjct: 453 KKSFRDSLEEVYNLNKFPSRQDKMKDALENN-CSHMETVFHVCTASVTSEIAEDKALELI 511
Query: 382 TKAVYREFHHTQTMCGYAAKKMDMAKKIGLV 412
KAV + + Y KK+D+A+ IGL+
Sbjct: 512 AKAVESRMNKAKFYEQYIEKKIDIAQAIGLI 542
>Os01g0956500 Conserved hypothetical protein
Length = 396
Score = 141 bits (356), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 152/293 (51%), Gaps = 16/293 (5%)
Query: 131 EMIEVKERHARYRIRFCKMLNKEFEDTM---KDPAEYSRGELLKENYFLRYERDETLGWY 187
++ E+ E+ A YRI ++ N D + K +Y L ++ YF YE ++L WY
Sbjct: 99 QLTELHEQLAFYRIIGYELSNGRKLDELDIAKLKEKYPPSILYEKGYFQYYE--DSLEWY 156
Query: 188 FHPVHTWLAGLNDYQKLVLVNHDDSTEFLARDDYHSCFNTYEVDEDYVKYCEELPKKIKW 247
F P A L++YQ+LVL D+ ++ D YHS ++TYE D YVK+CEEL K KW
Sbjct: 157 FDPERFQPAALDNYQRLVLC---DNGLYMDWDQYHSNYSTYESDLAYVKFCEELAHKTKW 213
Query: 248 IGDYVDL----DRSSQ-EWSKMDNTTFFQALKIATNFCHMTVGLAQFAYMEYVWDLR-EI 301
DY+ L D+ + +W K+ NT + QA+KIA +++ A+ EY+W +R +
Sbjct: 214 FQDYLVLIAVEDKITMGQWDKVKNTVYLQAMKIALRIRVVSLMQVMTAFQEYIWSMRFDC 273
Query: 302 SRLKEWPYFLHEIWKLVAKQKMNFNDALKVVYEMDMFHSFKFAVEAELNG--DKLFGLEY 359
K++ E+WK VAKQKM F DAL +Y DMF ++ EL + ++
Sbjct: 274 CNYKDFDGVYFEVWKRVAKQKMEFTDALSELYREDMFPLRNVDIKDELRSTRGRFRSMKE 333
Query: 360 RFSMCSKDISGDVEEGKALDLITKAVYREFHHTQTMCGYAAKKMDMAKKIGLV 412
+ + I V E +A LI A+ QT YA K+ +A+ IGL+
Sbjct: 334 NYDLYVACIDETVPEKEARQLIKDAIIEMIPKPQTYLDYARNKIKIAEDIGLI 386
>Os05g0173500 Conserved hypothetical protein
Length = 628
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 157/316 (49%), Gaps = 12/316 (3%)
Query: 104 QDDYFDYVKQLSPNSRRIDKWS-LLSHDEMIEVKERHARYRI---RFCKMLNKEFEDTMK 159
Q+ + Y+KQL S D WS +++ + ER A YRI K +D K
Sbjct: 306 QEKFNYYLKQLGFESNEYDFWSETYEPEQLTALHERLAIYRIVGYELSKGRKLGKQDIAK 365
Query: 160 DPAEYSRGELLKENYFLRYERDETLGWYFHPVHTWLAGLNDYQKLVLVNHDDSTEFLARD 219
+Y+ L KE YF YE E+L WYF +G DYQ+LVL D+ EFL +
Sbjct: 366 LKEQYNPSILRKEGYFRHYE--ESLEWYFDLEWCKYSGFQDYQRLVL---HDNVEFLEWE 420
Query: 220 DYHSCFNTYEVDEDYVKYCEELPKKIKWIGDYVDLDRSSQEWSKMDNTTFFQALKIATNF 279
YH +NTYE D YV+Y L + KWI DY+ D + EW ++ + QALKIA
Sbjct: 421 HYHLNYNTYEDDLAYVRYRARLANETKWIEDYLARDITQAEWRRVKDIASVQALKIARVS 480
Query: 280 CHMTVGLAQFAYMEYVWDLR-EISRLKEWPYFLHEIWKLVAKQKMNFNDALKVVYEMDMF 338
+ A + +++W ++ + + K++ +IWK VAK+KMNF +AL VY DMF
Sbjct: 481 GGVKAQAALAGFRDHIWSIQFDFNHYKDFDGVYFKIWKRVAKRKMNFREALLEVYREDMF 540
Query: 339 HSFKFAVEAELNGDKLF--GLEYRFSMCSKDISGDVEEGKALDLITKAVYREFHHTQTMC 396
K ++ EL+ +L ++ ++ + V E + LI +AV + T
Sbjct: 541 PVRKNGIKYELDNTQLRFKSMKEKYDAHVACLDESVPEDEVRQLIKEAVIKMKPKPHTYL 600
Query: 397 GYAAKKMDMAKKIGLV 412
YA KK+ ++ I L+
Sbjct: 601 DYARKKLQISMNIDLI 616
>Os01g0970200
Length = 333
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 139/301 (46%), Gaps = 71/301 (23%)
Query: 97 GPNVQTSQDDYFDYVKQLSPNSR--RIDKWSLLSHDEMIEVKERHARYRIRFCKML---- 150
G S D + Y+ QL P R +D + L+ D++ E H YR+++ K+L
Sbjct: 42 GLGEDISTDKFRGYLCQL-PQERDSPVDISTQLNFDQLDAQNELHELYRVKYYKLLQQVP 100
Query: 151 ---NKEFEDTMKDPAEYSRGELLKENYFLRYERDETLG-------------------WYF 188
+K DTM + + + L+E + +E D TL WYF
Sbjct: 101 RTGSKLDHDTMIEQYPFDMSKQLEE-VLMCFENDGTLDSVDDEVLWEVLKCFDYTFVWYF 159
Query: 189 HPVHTWLAGLNDYQKLVLVNHDDSTEFLARDDYHSCFNTYEVDEDYVKYCEELPKKIKWI 248
HP + LA L DYQ+LV+ N+ + D YH FNTY+V++ Y KY EL KK+K
Sbjct: 160 HPEYCKLAALVDYQRLVIKNY--GCMYANWDRYHMYFNTYDVEKQYAKYYVELSKKLK-- 215
Query: 249 GDYVDLDRSSQEWSKMDNTTFFQALKIATNFCHMTVGLAQFAYMEYVWDLREISRLKEWP 308
W K+ N +QA+KIAT F +T LA + E +
Sbjct: 216 ------------WGKVSNRGLYQAVKIATGFPKITAKLAYLGFHEL-----------DGV 252
Query: 309 YFLHEIWKLVAKQKMNFNDALKVVYEMDMF----HSFKFAV--------EAELNGDKLFG 356
YF EIW+ V KQKM+F DA+K VYE++ F K+ + EAE+ D++ G
Sbjct: 253 YF--EIWQRVTKQKMSFRDAMKEVYELNRFPVRQQKMKYVLEINDCSQWEAEVAEDEVLG 310
Query: 357 L 357
L
Sbjct: 311 L 311
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,755,231
Number of extensions: 569010
Number of successful extensions: 1234
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1221
Number of HSP's successfully gapped: 5
Length of query: 412
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 309
Effective length of database: 11,657,759
Effective search space: 3602247531
Effective search space used: 3602247531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)