BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0958400 Os01g0958400|AK121241
(415 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0958400 CRS1/YhbY domain containing protein 748 0.0
Os06g0304500 CRS1/YhbY domain containing protein 220 2e-57
Os04g0492900 CRS1/YhbY domain containing protein 147 2e-35
Os09g0363100 CRS1/YhbY domain containing protein 77 2e-14
Os04g0464800 CRS1/YhbY domain containing protein 76 4e-14
>Os01g0958400 CRS1/YhbY domain containing protein
Length = 415
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/415 (89%), Positives = 370/415 (89%)
Query: 1 MATRVLSQNLRKLASFSLLNLSQRAPISPSPEPLRPAIASFGKCLNPFYQFSPPWMVRWA 60
MATRVLSQNLRKLASFSLLNLSQRAPISPSPEPLRPAIASFGKCLNPFYQFSPPWMVRWA
Sbjct: 1 MATRVLSQNLRKLASFSLLNLSQRAPISPSPEPLRPAIASFGKCLNPFYQFSPPWMVRWA 60
Query: 61 SHSSVNLVLSDDGKPKFEIEEVEPSKKRGYLTXXXXXXXXXXXXXXXXXANKNDXXXXXX 120
SHSSVNLVLSDDGKPKFEIEEVEPSKKRGYLT ANKND
Sbjct: 61 SHSSVNLVLSDDGKPKFEIEEVEPSKKRGYLTKKRLKLQRKREKKKRKEANKNDPRRIRP 120
Query: 121 XXXXXXXXXXTPEARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGEERFYL 180
TPEARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGEERFYL
Sbjct: 121 KGKKIKQKFPTPEARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGEERFYL 180
Query: 181 KKVSQKKSNYXXXXXXXXXXXXILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSG 240
KKVSQKKSNY ILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSG
Sbjct: 181 KKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSG 240
Query: 241 GIPINTIGNDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVRRFIAVSEKE 300
GIPINTIGNDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVRRFIAVSEKE
Sbjct: 241 GIPINTIGNDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVRRFIAVSEKE 300
Query: 301 LELYYRHIALYGNPQSQNVDPVYCDDRRAASLKMEEPSQGKDLSHMDNDGFSDITDASES 360
LELYYRHIALYGNPQSQNVDPVYCDDRRAASLKMEEPSQGKDLSHMDNDGFSDITDASES
Sbjct: 301 LELYYRHIALYGNPQSQNVDPVYCDDRRAASLKMEEPSQGKDLSHMDNDGFSDITDASES 360
Query: 361 DEEANPSEYDDNDDETGDNIGTVLYDHGGFKVLTDWPTPMVKKQSLVPARQLSKG 415
DEEANPSEYDDNDDETGDNIGTVLYDHGGFKVLTDWPTPMVKKQSLVPARQLSKG
Sbjct: 361 DEEANPSEYDDNDDETGDNIGTVLYDHGGFKVLTDWPTPMVKKQSLVPARQLSKG 415
>Os06g0304500 CRS1/YhbY domain containing protein
Length = 348
Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/182 (58%), Positives = 133/182 (73%)
Query: 132 PEARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGEERFYLKKVSQKKSNYX 191
PE R++YK+EKAK KE L+EKL+KYE+ ++ P+ + L EE+FYLK+ +KK NY
Sbjct: 142 PEVRIRYKLEKAKRKEEWLIEKLRKYEVPRSPEPVHDPEILTEEEKFYLKRTGEKKKNYV 201
Query: 192 XXXXXXXXXXXILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGNDT 251
+LNMHLHWKKHETVKVICKPC+PGQ+ EYA E+ RLS G I+ N+T
Sbjct: 202 PVGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVIDIKPNNT 261
Query: 252 IVFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVRRFIAVSEKELELYYRHIALY 311
I+FYRGKNYVQP VMSP DTLSK+KALEK +YEQSLE +FI EKELE Y +H+AL+
Sbjct: 262 IIFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSLEHTSQFIEKLEKELEDYQKHVALF 321
Query: 312 GN 313
N
Sbjct: 322 KN 323
>Os04g0492900 CRS1/YhbY domain containing protein
Length = 479
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 113/191 (59%), Gaps = 2/191 (1%)
Query: 131 TPEARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGEERFYLKKVSQKKSNY 190
T E ++ YK++ A+ KE LV L K E P + L EE FY K+ QK NY
Sbjct: 138 TAEEKILYKLKLARNKEERLVAALTKIEPDDPSEPTHDPEVLTPEEHFYFLKMGQKSKNY 197
Query: 191 XXXXXXXXXXXXILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGND 250
ILNMHLHWKKH+T++VI K P +++E ASE+ARLSGGI ++ +
Sbjct: 198 VPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPDEVKEIASELARLSGGIVLDIQEGN 257
Query: 251 TIVFYRGKNYVQ--PDVMSPVDTLSKKKALEKSKYEQSLETVRRFIAVSEKELELYYRHI 308
TI+ YRGKNY Q P++MSP TL +KKAL+KSKY + L +RR+I E+EL + +
Sbjct: 258 TIIMYRGKNYAQPPPEIMSPKVTLPRKKALDKSKYRERLRALRRYIPRLEQELVDLHAQM 317
Query: 309 ALYGNPQSQNV 319
L + + QN
Sbjct: 318 KLARDYKGQNA 328
>Os09g0363100 CRS1/YhbY domain containing protein
Length = 947
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 175 EERFYLKKVSQKKSNYXXXXXXXXXXXXILNMHLHWKKHETVKVICKPCKPGQIQEYASE 234
EERF L+++ K + + NMHLHWK E VKV+ K Q++ A
Sbjct: 754 EERFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHWKHRELVKVLVKGKSFPQVKHIAIS 813
Query: 235 IARLSGGIPIN---TIGNDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVR 291
+ SGG+ I+ T I+ YRGKNY P ++ P + LS++KAL +S Q E +
Sbjct: 814 LEAESGGVLISVDKTTKGYAIILYRGKNYKTPQILKPRNLLSRRKALARSIELQRREGLN 873
Query: 292 RFIA 295
I+
Sbjct: 874 HHIS 877
>Os04g0464800 CRS1/YhbY domain containing protein
Length = 1042
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 8/193 (4%)
Query: 133 EARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGEERFYLKKVSQKKSNYXX 192
EARL I + + E ++ E E ++A+ ++ + EER+ L+KV K ++
Sbjct: 545 EARLSQAIAEKEKTEKLIEELEMSSEPSRAE----TREVISEEERYMLRKVGLKMKSFLL 600
Query: 193 XXXXXXXXXXILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPI---NTIGN 249
+ NMHLHWK E VK+ICK ++ A + SGGI +
Sbjct: 601 LGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKA 660
Query: 250 DTIVFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVRRFIAVSEKELELYYRHIA 309
I+ YRGKNY +P + P L+KK AL++S Q ++++ + K ++ Y +
Sbjct: 661 HAIIIYRGKNYQRPSTLRPKSLLNKKDALKRSVEYQRYKSLKLHVLNLSKNID-YLKDQM 719
Query: 310 LYGNPQSQNVDPV 322
+ + Q V P
Sbjct: 720 FFKQMEVQPVTPT 732
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,928,231
Number of extensions: 535773
Number of successful extensions: 2138
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2135
Number of HSP's successfully gapped: 6
Length of query: 415
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 312
Effective length of database: 11,657,759
Effective search space: 3637220808
Effective search space used: 3637220808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)