BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0956600 Os01g0956600|AK102888
(608 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0956600 Protein kinase-like domain containing protein 1233 0.0
Os03g0138100 RNA-binding region RNP-1 (RNA recognition moti... 276 3e-74
Os01g0967600 Conserved hypothetical protein 114 2e-25
Os11g0636900 U2 snRNP auxilliary factor, large subunit, spl... 71 3e-12
Os11g0682300 U2 snRNP auxilliary factor, large subunit, spl... 68 2e-11
>Os01g0956600 Protein kinase-like domain containing protein
Length = 608
Score = 1233 bits (3189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/608 (97%), Positives = 595/608 (97%)
Query: 1 MDPDQVEIPFKVLQERVPGKKKYSLRVIKPSSSKKICRSVNSYPLVCLKREMADNDHVHC 60
MDPDQVEIPFKVLQERVPGKKKYSLRVIKPSSSKKICRSVNSYPLVCLKREMADNDHVHC
Sbjct: 1 MDPDQVEIPFKVLQERVPGKKKYSLRVIKPSSSKKICRSVNSYPLVCLKREMADNDHVHC 60
Query: 61 IMLTLNHRNILSMKALSRDKVESNGPSSLAAFVEPYTGLLSSLCFKHDCWGDRINHIPSP 120
IMLTLNHRNILSMKALSRDKVESNGPSSLAAFVEPYTGLLSSLCFKHDCWGDRINHIPSP
Sbjct: 61 IMLTLNHRNILSMKALSRDKVESNGPSSLAAFVEPYTGLLSSLCFKHDCWGDRINHIPSP 120
Query: 121 LLQSLLRQVIEGLDFLRKNKLYHGNLNWDSILYLQPSTVKLANFRKQETMSLEEAQWADW 180
LLQSLLRQVIEGLDFLRKNKLYHGNLNWDSILYLQPSTVKLANFRKQETMSLEEAQWADW
Sbjct: 121 LLQSLLRQVIEGLDFLRKNKLYHGNLNWDSILYLQPSTVKLANFRKQETMSLEEAQWADW 180
Query: 181 LCLIKMLEEILERAAEISSKLAQCDRYFCGHVESXXXXXXXXXXXXXPAIKEIVLGHPLF 240
LCLIKMLEEILERAAEISSKLAQCDRYFCGHVES PAIKEIVLGHPLF
Sbjct: 181 LCLIKMLEEILERAAEISSKLAQCDRYFCGHVESLTALLKTLDKTALPAIKEIVLGHPLF 240
Query: 241 WDLMTRVNFFAKDISLRLNDDTFMSRVRASKIRKLPWNEGTTQDFKGLLFEMETYRKDEG 300
WDLMTRVNFFAKDISLRLNDDTFMSRVRASKIRKLPWNEGTTQDFKGLLFEMETYRKDEG
Sbjct: 241 WDLMTRVNFFAKDISLRLNDDTFMSRVRASKIRKLPWNEGTTQDFKGLLFEMETYRKDEG 300
Query: 301 IPAYDFRSLKDYVRCVCGAYAHWNKIKLNVDDIVRQNHPTICSDIWHLLGSSDMSHADSK 360
IPAYDFRSLKDYVRCVCGAYAHWNKIKLNVDDIVRQNHPTICSDIWHLLGSSDMSHADSK
Sbjct: 301 IPAYDFRSLKDYVRCVCGAYAHWNKIKLNVDDIVRQNHPTICSDIWHLLGSSDMSHADSK 360
Query: 361 KPVEEIKLISDVVRDSPHKIFIAGIPRVISSKMLRDIVSSFGQLAAYRFLFNEDLGGACA 420
KPVEEIKLISDVVRDSPHKIFIAGIPRVISSKMLRDIVSSFGQLAAYRFLFNEDLGGACA
Sbjct: 361 KPVEEIKLISDVVRDSPHKIFIAGIPRVISSKMLRDIVSSFGQLAAYRFLFNEDLGGACA 420
Query: 421 FLEYIDHSITSKACAGLNGMKLGGCVITAVGVLTDHPGQAGNEACPFHGIPANPKPLLAV 480
FLEYIDHSITSKACAGLNGMKLGGCVITAVGVLTDHPGQAGNEACPFHGIPANPKPLLAV
Sbjct: 421 FLEYIDHSITSKACAGLNGMKLGGCVITAVGVLTDHPGQAGNEACPFHGIPANPKPLLAV 480
Query: 481 PTQVLQLKNVFDQEEYSLLSKYEVDAVLEDVRVKCARYGAVKSINVVEYPAGSDNTKAPA 540
PTQVLQLKNVFDQEEYSLLSKYEVDAVLEDVRVKCARYGAVKSINVVEYPAGSDNTKAPA
Sbjct: 481 PTQVLQLKNVFDQEEYSLLSKYEVDAVLEDVRVKCARYGAVKSINVVEYPAGSDNTKAPA 540
Query: 541 VDARDNALASNNTALEAGCILVEFLCKEASFMAAHSLHGRPFGSRIVSAGYAPYDLLSLP 600
VDARDNALASNNTALEAGCILVEFLCKEASFMAAHSLHGRPFGSRIVSAGYAPYDLLSLP
Sbjct: 541 VDARDNALASNNTALEAGCILVEFLCKEASFMAAHSLHGRPFGSRIVSAGYAPYDLLSLP 600
Query: 601 EVFPVLRF 608
EVFPVLRF
Sbjct: 601 EVFPVLRF 608
>Os03g0138100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 404
Score = 276 bits (707), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 139/188 (73%), Positives = 155/188 (82%)
Query: 354 MSHADSKKPVEEIKLISDVVRDSPHKIFIAGIPRVISSKMLRDIVSSFGQLAAYRFLFNE 413
+ H KKP EEIKLISDVV DSPHKIFIAGI VISS+ML +IVSSFG LAAYRFLFNE
Sbjct: 2 VQHVAPKKPSEEIKLISDVVADSPHKIFIAGISGVISSEMLMEIVSSFGPLAAYRFLFNE 61
Query: 414 DLGGACAFLEYIDHSITSKACAGLNGMKLGGCVITAVGVLTDHPGQAGNEACPFHGIPAN 473
LGGACAFLEYIDHSITSKACAGLNGMKLGG ++TAV V + QA NEA PF+GIP +
Sbjct: 62 YLGGACAFLEYIDHSITSKACAGLNGMKLGGGILTAVNVFPNSTEQAFNEASPFYGIPDS 121
Query: 474 PKPLLAVPTQVLQLKNVFDQEEYSLLSKYEVDAVLEDVRVKCARYGAVKSINVVEYPAGS 533
K LL PT+VLQLKNVFDQEEY LLSK E++ +LEDVRV+CAR+GAVKSINVV+YPA S
Sbjct: 122 AKSLLEEPTKVLQLKNVFDQEEYLLLSKSELEEILEDVRVECARFGAVKSINVVKYPASS 181
Query: 534 DNTKAPAV 541
DNT +
Sbjct: 182 DNTTGDTI 189
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 64/83 (77%), Gaps = 5/83 (6%)
Query: 519 GAVKSINVVEYPAG-----SDNTKAPAVDARDNALASNNTALEAGCILVEFLCKEASFMA 573
GA KS E G S+ KAPAVDARDNALASN +ALEAGCILVEFL KEA+ +A
Sbjct: 315 GADKSGRENEQQGGAGVSESNTEKAPAVDARDNALASNTSALEAGCILVEFLRKEAACIA 374
Query: 574 AHSLHGRPFGSRIVSAGYAPYDL 596
AHSLHGR FGSRIVSAGYAP+DL
Sbjct: 375 AHSLHGRRFGSRIVSAGYAPHDL 397
>Os01g0967600 Conserved hypothetical protein
Length = 360
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 146/310 (47%), Gaps = 36/310 (11%)
Query: 52 MADNDHVHCIMLTLN--HRNILSMKALSRDKVESNGPSSLAAFVEPYTG-----LLSSLC 104
M +++ +HC+ + N H+NIL + + ++ + EPYTG L S+L
Sbjct: 65 MDNSNGLHCLEIMTNCLHKNILHAPIVQK----KEDVDCISVWHEPYTGNLLAYLESTLL 120
Query: 105 FKHDCWGDRINHIPSPLLQSLLRQVIEGLDFLRKNKLYHGNLNWDSILYLQPS----TVK 160
G+++ +P+P+LQ+L+ QV +GL LR YHGN + Y + + VK
Sbjct: 121 GAKHMVGEKVV-LPTPVLQNLISQVFDGLKMLRLCGKYHGNFTLEKTYYYKKNGNEIIVK 179
Query: 161 LANFR-KQETMSLEEAQWADWLCLIKMLEEILERAAEISSKLAQCDR----YFCGHVESX 215
LANF K + S Q D + L +I SK+A+ DR + C ++S
Sbjct: 180 LANFEVKDQVKSTPVLQAKDCQAVGDALRKI--------SKMAK-DRKDLDFDCSQIDSL 230
Query: 216 XXXXXXXXXXXXPAIKEIVLGHPLFWDLMTRVNFFAKDISLRLNDDTFMSRVRASK-IRK 274
I++ + GHP FW R I L +N F ++ ++ +
Sbjct: 231 AEELREFSFGDLCNIEKKIGGHPFFWVFDDRKFLLTCSIPLAMNKRAFRQKIEGNEDLIA 290
Query: 275 LPWNEGTTQDFKGLLFEMETYRKDEGIPAYDFRSLKDYVRCVCGAYAHWNKIKLN--VDD 332
LPW++ +D+ GL+ M YR D I +D S DYV CV G YAH ++K N VD
Sbjct: 291 LPWDK---EDYDGLINLMMKYRADHMIKKFDINSRVDYVLCVSGMYAHEKELKTNIQVDR 347
Query: 333 IVRQNHPTIC 342
++ + +P +C
Sbjct: 348 VIMERNPGLC 357
>Os11g0636900 U2 snRNP auxilliary factor, large subunit, splicing factor family
protein
Length = 574
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 36/237 (15%)
Query: 375 DSPHKIFIAGIPRVISSKMLRDIVSSFGQLAAYRFLFNEDLGGA--CAFLEYIDHSITSK 432
+ P +IF+ G+P + +R+++ SFG L + + + + G + AF Y D ++T
Sbjct: 355 EGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDI 414
Query: 433 ACAGLNGMKLGGCVITA----VGVLTDHPGQAGNEACPFH-GIPANPKPLL------AVP 481
ACA LNG+K+G +T G P Q E+ H A + L+ A+P
Sbjct: 415 ACAALNGIKMGDKTLTVRRANQGASQPRPEQ---ESMLLHVQQQAQMQKLMFQVGGGALP 471
Query: 482 TQVLQLKNVFDQEEYSLLSKYEVDAVLEDVRVKCARYGAVKSINVVEYPAGSDNTKAPAV 541
T+V+ L V +E L E + +++D+R + RYG + + V+ P D + AP
Sbjct: 472 TKVVCLTQVVSPDE--LRDDEEYEDIVQDMREEGCRYGNLVKV-VIPRP---DPSGAPVA 525
Query: 542 DARDNALASNNTALEAGCILVEFLCKEASFMAAHSLHGRPFGSRIVSAGYAPYDLLS 598
G + +EF E+S A + +HGR F + V A + P D +
Sbjct: 526 G--------------VGRVFLEFADVESSTKAKNGMHGRKFANNQVVAVFYPEDKFA 568
>Os11g0682300 U2 snRNP auxilliary factor, large subunit, splicing factor family
protein
Length = 378
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 58/250 (23%)
Query: 375 DSPHKIFIAGIPRVISSKMLRDIVSSFGQLAAYRFLFNEDLGGA--CAFLEYIDHSITSK 432
+ P +IF+ G+P + +R+++ SFG L + + + + G + AF Y D ++T
Sbjct: 161 EGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDI 220
Query: 433 ACAGLNGMKLGGCVITAVGVLTDHPGQAGNEACPFHGIPANPKP---------------- 476
ACA LNG+K+G +T + N+ A P+P
Sbjct: 221 ACAALNGIKMGDKTLTV---------RRANQGA------AQPRPEQESILLQAQQQVQLQ 265
Query: 477 -----LLAVPTQVLQLKNVFDQEEYSLLSKYEVDAVLEDVRVKCARYGAVKSINVVEYPA 531
+ A+PT+V+ L V +E +YE ++ED+R++ +YG + + V+ P
Sbjct: 266 KLVYQVGALPTKVVCLTQVVSADELKDDEEYE--DIMEDMRLEAGKYGNLIKV-VIPRP- 321
Query: 532 GSDNTKAPAVDARDNALASNNTALEAGCILVEFLCKEASFMAAHSLHGRPFGSRIVSAGY 591
D + P G + +E+ + + A ++HGR FG V A +
Sbjct: 322 --DPSGLPVAG--------------VGKVFLEYADVDGATKAKTAMHGRKFGGNPVVAVF 365
Query: 592 APYDLLSLPE 601
P + S E
Sbjct: 366 YPENKFSSAE 375
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,998,108
Number of extensions: 818450
Number of successful extensions: 1990
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1986
Number of HSP's successfully gapped: 6
Length of query: 608
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 501
Effective length of database: 11,448,903
Effective search space: 5735900403
Effective search space used: 5735900403
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)